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molgenis
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systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
https://github.com/molgenis/systemsgenetics/wiki
GNU General Public License v3.0
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how to extract the expression numerical matrix of SNPS?
#672
ChaoXianSen
closed
1 month ago
3
Error during GADO prioritisation when it encounters an unexpected HPO term
#671
souzadevinicius
opened
2 months ago
3
update mbqtl readme
#670
royoelen
closed
4 months ago
0
gene_network_decomposition.py
#669
biopig
closed
4 months ago
1
How to select significant cell type eQTL
#668
zhangpicb
opened
9 months ago
6
[Genotype Harmonizer] Bug Report: Confusing Problems on SNPs excluding
#667
jacklin9703
opened
9 months ago
0
Not all variants are flipped
#666
abedkurdi
opened
10 months ago
0
can't open eQTLGen now
#665
LynnChan99
opened
1 year ago
0
[Genotype-IO] Error parsing VCF info column value
#664
Bonder-MJ
opened
1 year ago
0
GADO doesn't produce `all_samples.txt` in some cases
#663
dennishendriksen
opened
1 year ago
0
Update README.md
#662
PatrickDeelen
closed
4 months ago
0
Fixes for eqtl interaction analyser
#661
harmjanwestra
closed
1 year ago
0
Can't download jar for eQTL analyzer
#660
BennyStrobes
opened
1 year ago
6
update some dependencies + log4j fixes
#659
harmjanwestra
closed
1 year ago
0
fix logging in bgen writer
#658
PatrickDeelen
closed
1 year ago
0
Bump itextpdf from 5.5.6 to 5.5.13.3 in /genetica-libraries
#657
dependabot[bot]
opened
1 year ago
0
DS updates
#656
PatrickDeelen
closed
1 year ago
0
some changes to mbqtl
#655
harmjanwestra
closed
1 year ago
0
Now overwriting BGI tables whenever it already exists
#654
CAWarmerdam
closed
1 year ago
0
Resolved bug in BGEN, BGI writer Genotype-IO, GH
#653
CAWarmerdam
closed
1 year ago
0
Bump testng from 6.5.2 to 7.7.0 in /eqtl-mapping-pipeline
#652
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.8.1 to 7.7.0 in /Downstreamer
#651
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.5.2 to 7.7.0 in /eqtl-functional-enrichment
#650
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.4 to 7.7.0 in /genetica-libraries
#649
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.5.2 to 7.7.0 in /Genotype-Harmonizer
#648
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.4 to 7.7.0 in /Genotype-IO
#647
dependabot[bot]
opened
1 year ago
0
Bump testng from 6.8.1 to 7.7.0 in /cellTypeSpecificAlleleSpecificExpression
#646
dependabot[bot]
opened
1 year ago
0
small typo in pom
#645
harmjanwestra
closed
1 year ago
0
Most important is log4j updates
#644
PatrickDeelen
closed
1 year ago
0
Bug fixes and minor improvements to Genotype-IO and GH
#643
CAWarmerdam
closed
1 year ago
0
Decon-eQTL
#642
TatiKarp
closed
1 year ago
2
Bump htsjdk from 2.23.0 to 3.0.1 in /Downstreamer
#641
dependabot[bot]
opened
1 year ago
0
Bump htsjdk from 2.23.0 to 3.0.1 in /genetica-libraries
#640
dependabot[bot]
opened
1 year ago
0
Bump htsjdk from 2.23.0 to 3.0.1 in /PatricksToolbox
#639
dependabot[bot]
opened
1 year ago
0
Bump htsjdk from 1.129 to 3.0.1 in /cellTypeSpecificAlleleSpecificExpression
#638
dependabot[bot]
opened
1 year ago
0
difficults in using Genotype Harmonizer
#637
malu-rdz
opened
1 year ago
1
Replaced .dat matrix with lz4 row compressed .datg matrix.
#636
PatrickDeelen
closed
1 year ago
0
Changed mvn plugin configurations in Genotype-Harmonizer and Genotype…
#635
CAWarmerdam
closed
1 year ago
0
Recount3 scripts and new release for genotype harmonizer
#634
PatrickDeelen
closed
1 year ago
0
Preferred genotype field for VCF files
#633
CAWarmerdam
closed
1 year ago
2
Error when converting .vcf file to .bgen: "Phased data not available"
#632
DanKaptijn
closed
1 year ago
2
Downstreamer Gzip update
#631
harmjanwestra
closed
1 year ago
0
Bump log4j-core from 2.16.0 to 2.17.1 in /PatricksToolbox
#630
dependabot[bot]
closed
1 year ago
0
Sync
#629
PatrickDeelen
closed
2 years ago
1
GADO command line issue, gene prioritization doesn't work
#628
zhouyunyun11
opened
2 years ago
0
Bump itextpdf from 5.5.6 to 5.5.12 in /genetica-libraries
#627
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.18.2 to 1.22.0 in /GeneNetworkAnalysis
#626
dependabot[bot]
opened
2 years ago
0
Update ojAlgo to v51.3.0
#625
apete
closed
4 months ago
0
Bump gson from 2.1 to 2.8.9 in /genetica-libraries
#624
dependabot[bot]
opened
2 years ago
0
move betaqtl to mbqtl
#623
harmjanwestra
closed
2 years ago
0
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