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molgenis
/
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
https://github.com/molgenis/systemsgenetics/wiki
GNU General Public License v3.0
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move betaqtl to mbqtl
#623
harmjanwestra
closed
2 years ago
0
Header LDCalculator is incorrect
#622
harmbrugge
closed
2 years ago
1
Update README.md
#621
PatrickDeelen
closed
2 years ago
0
Fixed bug for reading haplotype probabilities from phased allele dosages. Improved support for genotype format preferences
#620
CAWarmerdam
closed
2 years ago
0
tabix support for CSI index
#619
ClayBirkett
closed
2 years ago
1
Bump numpy from 1.18.2 to 1.21.0 in /GeneNetworkAnalysis
#618
dependabot[bot]
closed
2 years ago
1
new module betaqtl + some fixes to EMP
#617
harmjanwestra
closed
2 years ago
0
Bump log4j-core from 2.16.0 to 2.17.1 in /GadoCommandline
#616
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.1 in /eqtl-mapping-pipeline
#615
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.1 in /Genotype-Harmonizer
#614
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.1 in /Downstreamer
#613
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.1 in /genetica-libraries
#612
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.0 in /genetica-libraries
#611
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.0 in /Genotype-Harmonizer
#610
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.0 in /GadoCommandline
#609
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.0 in /Downstreamer
#608
dependabot[bot]
closed
2 years ago
1
Bump log4j-core from 2.16.0 to 2.17.0 in /eqtl-mapping-pipeline
#607
dependabot[bot]
closed
2 years ago
1
Dowstreamer stuff and log4j update
#606
PatrickDeelen
closed
2 years ago
0
Increase the usage of compound assignment operators
#605
elfring
opened
2 years ago
0
Downstreamer : java.lang.RuntimeException: java.lang.ArrayIndexOutOfBoundsException
#604
nrosewick
opened
3 years ago
3
Dependencies issues Downstreamer
#603
nrosewick
closed
3 years ago
0
DS
#602
PatrickDeelen
closed
3 years ago
0
Chromosome X
#601
DanielEWeeks
closed
3 years ago
1
Add comments to GeneNetworkAnalysis code
#600
HenryWiersma
closed
3 years ago
1
Updates to Decon-QTL and eQTL mapping pipeline
#599
harmjanwestra
closed
3 years ago
0
can not open this list
#598
lizhebio
opened
3 years ago
0
Bump logback-classic from 1.1.2 to 1.2.0
#597
dependabot[bot]
closed
1 year ago
2
Bump logback-core from 1.1.2 to 1.2.0
#596
dependabot[bot]
closed
1 year ago
2
Decon-eQTL dosage and snpsToTest
#595
cindywen96
closed
3 years ago
3
Bump commons-io from 2.4 to 2.7 in /Decon2/Decon-eQTL
#594
dependabot[bot]
closed
3 years ago
0
Bump commons-io from 2.4 to 2.7 in /Genotype-IO
#593
dependabot[bot]
closed
2 years ago
1
throw warning instead of error when a cell type does not have any marker genes
#592
npklein
closed
2 years ago
0
Overdue pull request
#591
harmjanwestra
closed
3 years ago
0
Add the GeneNetwork analysis scripts to the system genetics repository
#590
HenryWiersma
closed
3 years ago
0
Decon-eQTL - dosage file missing values
#589
mooreann
closed
3 years ago
1
fix build issues
#588
PatrickDeelen
closed
3 years ago
0
Strand alignment error
#587
ConnieXuhm
opened
3 years ago
1
GADO profiles update
#586
edg1983
opened
4 years ago
7
Lots of stuff mostly donwstreamer
#585
PatrickDeelen
closed
4 years ago
0
Bump commons-beanutils from 1.9.3 to 1.9.4 in /eqtl-mapping-pipeline
#584
dependabot[bot]
closed
3 years ago
1
In help message one of options was missing
#583
npklein
closed
3 years ago
0
Bump junit from 4.12 to 4.13.1 in /Decon2/Decon-eQTL
#582
dependabot[bot]
closed
4 years ago
0
Bump junit from 3.8.1 to 4.13.1 in /MetaGenomicDataProcessing
#581
dependabot[bot]
opened
4 years ago
0
Bump junit from 3.8.1 to 4.13.1 in /eQTLInteractionAnalyser
#580
dependabot[bot]
opened
4 years ago
0
Decon-eQTL: Expression file needing snp?
#579
mooreann
closed
4 years ago
1
INFO - Variants where not sorted, loading will be faster if the data is pre-sorted
#578
onebeingmay
closed
4 years ago
1
decon-eQTL genotype file
#577
mooreann
closed
4 years ago
1
fix nullpointer error when using 2 celltypes; add handling for misssing (-1) genotype
#576
npklein
closed
3 years ago
0
make decon-eqtl a header
#575
npklein
closed
4 years ago
0
Update README.md
#574
npklein
closed
4 years ago
0
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