-
biopython/biopython#1686 is discussing reading in compressed files. pandas handles this pretty nicely (never run into issues myself), but it looks like the code infers the compression from the file ex…
-
Hi,
I cannot seem to run the IMGT renumbering for some TCR pdb structures.
_(base) python Example_scripts_and_sequences/ImmunoPDB.py -i 999-coot-1.pdb -o test4_999.pdb -s imgt --receptor tr
/sc…
-
Version 3.0 offers an opportunity to change some default settings. Let's list them here.
## `make-consensi.py`
`--aligner`: `biopython`
Currently it's `swalign`, an esoteric Smith Waterman implem…
-
We should think about what our goals are, and make sure that we are providing something that isnt already available through projects such as biopython or scikit-bio.
Here are my specific needs:
…
-
Hi
I installed WUB from conda but none of the tools are working and throwing me an error as some libraries have been removed from bioconda. is it possible that you could update it?
conda 4.10.0
…
-
https://github.com/biopython/biopython/blob/6c75d2da18afdc89b6b3ef994d87c601f856ae27/Bio/codonalign/codonseq.py#L762
-
SEQRES is usually needed to fix the missing residue or loops in PDB. Existing Python libraries including BioPython and MDtraj can not write a SEQRES record. If you can add this feature, it will be rea…
-
Version 1.76 is the last release to support Python 2.7 and 3.5, all later releases of biopython require Python 3.6 or greater. Version 1.77 was released the 25th of May 2020.
-
* Consolidate tree library dependencies (BioPython, ete3, dendropy)
* How to handle test dependencies (numdifftools)?
-
We currently only run a limited subset of Windows platforms via AppVeyor for continuous integration. I am currently trying a broader set as part of building wheels - and that has found a new test fail…