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christiaanjs
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treeflow
GNU General Public License v3.0
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Tutorial, docs, user friendliness
#72
christiaanjs
closed
2 months ago
0
Subsample alignment across sites to accelerate SGD for ML and VI
#71
christiaanjs
opened
3 months ago
0
Fix ignored expections when using `estimate_log_ml_importance_sampling` with `JointDistributionCoroutine`
#70
christiaanjs
opened
3 months ago
0
Fix string dunder methods for tree distributions
#69
christiaanjs
opened
4 months ago
0
Publish docs via rtd
#68
christiaanjs
closed
1 year ago
0
Bump tensorflow from 2.11.0 to 2.11.1
#67
dependabot[bot]
opened
1 year ago
0
Preorder Highway flow transformation
#66
christiaanjs
opened
1 year ago
1
PostorderNodeMarkovChain log probability
#65
christiaanjs
closed
1 year ago
1
Investigate heavy-tailed base distributions for node heights
#64
christiaanjs
opened
1 year ago
0
Structured variational approximation
#63
christiaanjs
opened
1 year ago
0
Adapt normalizing flows tracing to reduce memory requirements
#62
christiaanjs
opened
1 year ago
0
Tree metadata statistics output from VI samples
#61
christiaanjs
opened
1 year ago
0
Figure out why `fit_surrogate_posterior` doesn't work
#60
christiaanjs
closed
1 year ago
0
Convergence criteria in VI CLI
#59
christiaanjs
opened
2 years ago
1
Calibrations on internal nodes
#58
christiaanjs
opened
2 years ago
0
Get site/substitution gradients from bito
#57
christiaanjs
opened
2 years ago
0
Approximation serialisation
#56
christiaanjs
opened
2 years ago
0
Support non-time reversible substitution models
#55
christiaanjs
opened
2 years ago
0
Maximum likelihood CLI
#54
christiaanjs
closed
1 year ago
1
Summarisation of inference outputs
#53
christiaanjs
closed
2 years ago
0
Flexible phylo model specification
#52
christiaanjs
closed
2 years ago
0
Benchmark CLI fixes
#51
christiaanjs
closed
2 years ago
0
Basic VI CLI
#50
christiaanjs
closed
2 years ago
0
Benchmark CLI
#49
christiaanjs
closed
2 years ago
0
Tree redesign
#48
christiaanjs
closed
2 years ago
0
New demos/examples and documentation
#47
christiaanjs
closed
1 year ago
0
Test and rethink `bito` acceleration
#46
christiaanjs
closed
2 years ago
1
Update VI approximation construction functions
#45
christiaanjs
closed
2 years ago
1
Benchmark CLI
#44
christiaanjs
closed
2 years ago
0
Likelihood rescaling
#43
christiaanjs
opened
2 years ago
0
Non-parametric coalescent models
#42
christiaanjs
opened
2 years ago
1
MAP inference with Numpy optimizers
#41
christiaanjs
opened
2 years ago
1
Relaxed coalescent
#40
christiaanjs
closed
2 years ago
1
`TensorArray` implementation of ratio transform
#39
christiaanjs
closed
2 years ago
0
Rethink tree and topology representations
#38
christiaanjs
closed
2 years ago
1
libsbn likelihood with `tf.while_loop`
#37
christiaanjs
opened
2 years ago
0
Tensorflow likelihood working with `tfp.vi.surrogate_posterior`
#36
christiaanjs
closed
2 years ago
0
Optimize likelihood implementation
#35
christiaanjs
closed
2 years ago
1
Restructure and documentation
#34
christiaanjs
closed
2 years ago
0
Implement TensorArray-based likelihood
#33
christiaanjs
closed
2 years ago
0
Custom tree gradient working in function mode
#32
christiaanjs
closed
1 year ago
0
Debugging
#31
christiaanjs
closed
2 years ago
0
Update to work with current libsbn
#30
christiaanjs
closed
2 years ago
1
Fix warnings from Deterministic subclass
#29
christiaanjs
closed
2 years ago
0
Tool to specify Normal-Gamma prior parameters
#28
christiaanjs
opened
3 years ago
0
Numerical stability of very short branches with scaled rate approximation
#27
christiaanjs
opened
3 years ago
0
Install script + libsbn update
#26
christiaanjs
closed
3 years ago
0
Think about dependencies
#25
christiaanjs
opened
3 years ago
1
Install script
#24
christiaanjs
closed
1 year ago
0
Relaxed clock branch rate approximations, approx serialisation
#23
christiaanjs
closed
3 years ago
0
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