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Similar to #10 except that allow grouping of multiple plates when computing the reference distribution. So, for instance, we should be able to build reference distributions from all DMSO cells across …
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This is intended to be used right after the SQLite file is produced. It strips `Image_` from column names with prefix `Image_Metadata_` in the `image` table.
I'm not thrilled about the fact that th…
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If CSVs are missing certain columns (such as when some images have brightfield and some don't, or when CP throws and error and doesn't write some), handle it gracefully by filling with NA (or somethin…
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Specify option to filter out images that fail QC
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Currently, most scripts assume a specific folder structure, which is great for keeping the options compact (only need to specify batchname and plate_id for most cases). But this makes it inflexible. K…
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Something changed on Travis
from
https://travis-ci.org/cytomining/cytominer-database/jobs/228475852
to
https://travis-ci.org/cytomining/cytominer-database/jobs/228867064
(nothing changed in this…
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cloned issue from https://github.com/cytomining/cytominer/issues/49
sources: similarity network fusion
http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2810.html
R implementation
https:/…
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Use `pip install --upgrade --editable .[test]` to install the latest versions of dependencies on Travis.
Additionally, I'm not sure why Cython is being installed. It doesn't appear to be necessary.
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Build is broken due to changes upstream in dplyr and related packages.
Once done, delete https://github.com/cytomining/cytominer/tree/peg-package-versions