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I would like to add user-defined T and q tendencies to the radiative-convective model, in order to simulate the effect of advection. I imagine it would look like a subprocess where I would input the t…
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Following the example of what's done for carbon isotopes, I'm imagining that the water tracer updates will (eventually) look like this, for any tracers where fractionation is not at play:
1. Do a b…
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Was wondering where the full core example is to get this image:
I tried run…
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When removing a reaction from a model inside a context, it appears the reaction is added back to the model but the underlying solver objects are mangled.
```python
import cobra.test
model = cobra…
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#### Problem description
Running `memote report snapshot -a "-vv"` on the iJO 1366 model results in 8 `TypeError` exceptions. All the errors occur in `test_biomass.py`. The specific functions these…
siddC updated
6 years ago
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Note to self for when I have some free time:
- The driver was slightly updated, there are header changes (in particular a 'new' wait_for_update_complete, w/ collision info, like on Kindles).
- Potenti…
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#### Problem description
Please explain:
I tried to import a sbml model downloaded from https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-5-180
#### Code Sample
```python
mod…
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These are included here as a group for completeness.
These issues are tickets and commit changes before 2009 and includes work for Version 3.0
george zyvoloski emails May 2017 regarding V2.24 not …
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Issues added by bulk in conversion from Mercurial to github
These are fixed Issues edited from Release_notes_V3.1.0.txt
(Removed changesets not related to code fixes)
Version 3.1.0 Jan 29 2008 …
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#### Problem description
Hi everyone,
it seems there is a bug in the setting of the solver for running pFBA.
When 'cglpk' is passed as solver to pFBA a solution is returned where the steady-state…
JuBra updated
6 years ago