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Hello, i'm using smrtlink with cromwell and analysis is going well but at specific time some issues came along and analysis started to fail but i think this is related to cromwell (honestly idk) pleas…
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Hi all,
Ever since Tidal removed the MQA tracks from it's library, I was not able to stream FLAC HiRes Content to my HiFiBerry Setup, even though the tracks are available in MAX Quality. I'm only g…
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As I am analyzing new HiFi-codec code I encountered three small bugs:
1. Torchaudio Melspectrogram :
Here : https://github.com/yangdongchao/AcademiCodec/blob/3ee7baf94387e72de5777a7b824e401d1663cc…
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Hi @chhylp123,
I have both short reads (Illumina) and long reads (Pacbio HiFi) for parents. Which data do you recommend to use for hifiasm-trio mode? or merge short reads and long reads?
For ya…
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This is an automated proposal to look at a commit made by Maki and import it into [Overte](https://github.com/overte-org/overte)
| **Commit:** | 60400f956edce3cbd5ec4284391800aad85c6f2f |
| --- | --…
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hello, can hifi, ont, and hic data be used at the same time? How to use hifi and ont data at the same time? Many thanks.
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Dear Authors:
Here is my kmer distribution result from the hifiasm v0.15.4 on ccs hifi reads with default paras. There is no peak and I don't know why would this happen.
I use the hifi data run a…
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I am working on an assembly for an expected genome size of 2.65Gbp. We have HiC data, and 6 SMRTCells worth of HIFI data (3 from a male, and 3 from a female).
Initially, I tried the assembly at t…
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Hi, thank you so much for the great tool.
I'm trying to apply longshot on long-read RNA-seq data (Iso-seq data from PacBio HiFi reads).
I ran the pipeline with default options and got ~30% reads …
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Hi there!
I am using the latest version(0.19.5) to assemble my genome using ~100X hifi reads, ~30X UL reads, and ~100X hic reads. When comparing to the assembled version using 0.16.1, it did impro…