chhylp123 hifiasm issues

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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issues

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which value for --s-base

#729 AlcaArctica opened 1 minute ago
0
Hap1 is smaller in size and has a low contig N50, while Hap2 is larger and has a higher contig N50.

#728 afiyachida opened 14 hours ago
0
Although I specified the value of hum-cov, the log shows that the peak_hom for subsequent analysis is not 26

#727 Tolernabio opened 1 week ago
0
Hom_cov, Kmers, yeiled two haplodoid of different size and much duplication

#726 DLCrawford opened 1 week ago
0
contig names with nhap > 2

#725 chklopp opened 2 weeks ago
0
building two haplotypes even after specifying --n-hap 1

#724 amara86 opened 2 weeks ago
0
Genome typing using both parental short reads and Hic reads

#723 heziqing opened 2 weeks ago
0
Problems with a duplicated region

#722 LauraSkak opened 3 weeks ago
0
Illegal instruction (core dumped)

#721 paulkim194 opened 3 weeks ago
0
how to read ec.bin

#720 jetrz closed 3 weeks ago
4
max length seems too long

#719 Xoey0314 opened 3 weeks ago
1
hifiasm using about gametophyte of fern

#718 guoshanf opened 3 weeks ago
2
Understanding the complex topologies of unitigs

#717 OceanLyu closed 2 weeks ago
2
Hifiasm with Ultralong_ONT

#716 handesome opened 1 month ago
1
Usage with desbalanced haplotypes

#715 trn30 closed 4 weeks ago
2
Trio binning with long reads parents

#714 jeffchen2000 opened 1 month ago
1
Mistakenly purge of homozygous seqence in polyploid genome

#713 Axolotl233 opened 1 month ago
4
Job keeps failing due to time limit of 7 days enforced by cluster.

#712 JohnUrban opened 1 month ago
2
--primary/-l0 option

#711 Rhia15 opened 1 month ago
4
Abnormal k-mer Frequencies in Hybrid Assemblies Using Hifiasm Version 0.19.9

#710 alex-kozik opened 1 month ago
0
Trio binning - high error rates and significant assembly size differences

#709 BrianSmart opened 1 month ago
0
Tetraploid with high heterozygosity

#708 Liyong-Zhang opened 2 months ago
1
Missing and Duplicated Buscos in diploid haplotype-resolved assemblies

#707 kbarslan opened 2 months ago
0
a third of the hifi reads not present in gfa

#706 zhenzhenyang-psu opened 2 months ago
0
Discard the output file reads *.ec.fa

#705 pailloufat-stack opened 2 months ago
0
KMer Count is very skewed towards the beginning

#704 Furkan9015 opened 2 months ago
0
Change ptg*****l to ptg*****L.

#703 xiekunwhy opened 2 months ago
1
large and discontinuous assembly results using only HiFi sequencing data

#702 biozzq opened 2 months ago
0
How to further improve the busco completeness?

#701 oddguyeee opened 2 months ago
0
hifiasm log file

#700 Samyuktha9624 opened 2 months ago
0
How to deal with extremely high mapping rate?

#699 oddguyeee opened 2 months ago
3
How to deal with extremely high mapping rate?

#698 oddguyeee opened 2 months ago
0
het peak -1 and second peak on kmer distribution plot missing

#697 desa-la opened 2 months ago
3
How to replace a consensus reference with either haplotypes after asm?

#696 Isoris opened 3 months ago
0
Clarification on the post-join step

#695 diego-rt opened 3 months ago
0
Clarification on hifiasm (HiC)

#694 JHCCoder opened 3 months ago
0
Telo option

#693 aabaricalla opened 3 months ago
1
Use p_ctg.fa and a_ctg.fa to fill the gaps of hap1.fa and hap2.fa?

#692 DayTimeMouse opened 3 months ago
0
Bus error problem

#691 chywish opened 3 months ago
0
different size for diploid organisms with low heterozygosity levels

#690 Overcraft90 opened 3 months ago
0
Question regarding quality threshold for PacBio and ONT assembly

#689 s-t-calus opened 3 months ago
0
Recommendations for HiFi Data Depth in Haplotypic and Polyploid Assemblies

#688 WangZhSi opened 3 months ago
0
Which does GFA file contain sex chromosome derived sequences?

#687 Jung19911124 opened 3 months ago
0
issues with memory usage

#686 LaurenHuet closed 2 months ago
0
Incomplete haplotype-level assembly with hic

#685 dandanWang2019 opened 3 months ago
0
Core dump related to usage -5 parameter

#684 rfinkers closed 4 weeks ago
7
About running hifiasm

#683 qinPX opened 4 months ago
1
how to estimate the homo-coverage for captured HiFi sequencing data

#682 wangBiojin opened 4 months ago
0
Confused about large contigs with 'c' suffix during fungal genome assembly

#681 Hanjiangna opened 4 months ago
0
Thoughts on using parental Hi-C reads for trio-binning?

#680 tzxiong opened 4 months ago
0