chhylp123 hifiasm issues

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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issues

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No further progress after generating *bin files

#658 Iven-gif opened 3 months ago
1
What is the strategy for Ultra-long ONT integration?

#657 polchan opened 3 months ago
6
fungi diploid assemble phasing errors

#656 Hanjiangna opened 4 months ago
0
In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".

#655 xujialupaoli opened 4 months ago
0
Consider separating source files from build and other files.

#654 isovic opened 4 months ago
0
Recreate p_ctg from p_utg

#653 diego-rt opened 4 months ago
3
Read error correction does not reduce the number of kmers present once, twice or three times

#652 chklopp opened 4 months ago
1
Interchromosomal misjoin

#651 Han-Cao opened 4 months ago
2
Resolving switching error (?)

#650 s-kyungyong opened 4 months ago
0
*.ovlp.bin file

#649 tianjio opened 4 months ago
1
Switch error on X and Y chromosome

#648 Lin-Yuying opened 4 months ago
2
Spend too long times to run hifiasm

#647 hcph opened 4 months ago
6
Basic Question About HiFi Input

#646 foreignsand closed 2 months ago
3
Empty haplotype 2 gfa files by ONT integration

#645 malearimond opened 5 months ago
1
missing 8Mb sequences in the assembly

#644 xzhoubayer opened 5 months ago
6
Ultra Long intergration failed: no output for UL kmer counting

#643 mvolar closed 4 months ago
3
line 8: 110334 Aborted(core dumped)

#642 yao-chenxin opened 5 months ago
4
Linux Aarch64 support

#641 martin-g opened 5 months ago
5
Is x20 of Hifi data enough to construct draft assembly of 6.5Gb genome?

#640 Jung19911124 opened 5 months ago
1
discontinuous assembly with shorter pacbio hifi reads but high coverage

#639 leqi0001 opened 5 months ago
2
In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal

#638 Magiclexfr opened 5 months ago
0
Hifi + Hi-c + ONT assembly fails

#637 pashapu43 opened 5 months ago
0
No haploid.gfa files output in trio-binning mode

#636 tzjingyang opened 5 months ago
3
Possible missing one haplotype in human assemblies

#635 woodoo46 opened 5 months ago
2
how to make the correct genome size estimation for allotetraploid species?

#634 RezwanCAAS opened 5 months ago
3
setting K parameter in yak

#633 DustinSokolowski closed 5 months ago
2
Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly？

#632 GLking123 opened 6 months ago
2
Question about the depth of ONT ultra-long reads

#631 chenchen-eng opened 6 months ago
1
Help!!! Segmentation fault (core dumped)

#630 ajkshdkjahdka opened 6 months ago
1
Mitigate Overlapping Sequence Assignments in Haplotypes

#629 xuxingyubio opened 6 months ago
3
low BUSCO scores

#628 zuodabin opened 6 months ago
1
Output interpretation with HiFi+ONT+HiC with inbred samples + `-l0`

#627 AndreaGuarracino opened 6 months ago
1
Add Options for Pore-C Data

#626 GLking123 closed 6 months ago
2
How do you assemble chromosomes X and Y?

#625 zuodabin opened 6 months ago
3
overlap parameter

#624 tianjio opened 6 months ago
2
Why more contigs always present in haplotype 1 than haplotype 2?

#623 Chenglin20170390 closed 6 months ago
2
larger assembly size than kmer estimation genome size

#622 leon945945 opened 6 months ago
2
larger assembly size than kmer estimation genome size

#621 leon945945 closed 6 months ago
1
issue in generating hap1 and hap2 asm files

#620 dabitz opened 6 months ago
0
RAM required for bacterial genome assembly from HiFi reads

#619 microbiota2022 opened 6 months ago
0
option -l0 giving different options

#618 Rhia15 opened 6 months ago
0
Pseudo trio-binning with only one sex

#617 Magiclexfr closed 6 months ago
3
tetraploïd assembly, missing kmers in p_utg and r_utg files

#616 chklopp opened 7 months ago
0
For genome with extremely rich simple repeat sequences

#615 YouxinZhao opened 7 months ago
0
Aborted on recalculate_window_advance()

#614 jwalewski opened 7 months ago
2
possible regression in using HiC reads in --h1 --h2

#613 jbh-cas opened 7 months ago
5
Length of time

#612 Rhia15 closed 7 months ago
0
Add discussion - polyploid genomes

#611 tallnuttrbgv opened 7 months ago
1
--n-hap 3 does not give three haploid genomes

#610 tallnuttrbgv opened 7 months ago
1
SegFault during GFA output stage

#609 SHuang-Broad opened 7 months ago
2

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