chhylp123 hifiasm issues

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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issues

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Cannot run on HPC with older ubuntu version.

#679 ap1438 opened 4 months ago
1
Different size of hap1 and hap2

#678 shehongbing opened 4 months ago
0
Hifiasm assembly results and run log issues

#677 majssssa opened 4 months ago
0
Potential Translocation Assembly

#676 YutingSheep closed 4 months ago
1
Question about the -5 parameter

#675 Iven-gif opened 4 months ago
0
chimeras in long SSRs

#674 kevfengler227 opened 4 months ago
0
Running hifiasm with unsupported option gives segmentation fault

#673 smikkelsendk opened 4 months ago
0
v0.15.3 hom-peak and het-peak error

#672 wuhuwuks opened 4 months ago
2
assembly genome is bigger than survey, error log

#671 feiyu007 opened 5 months ago
1
output of partial phasing - some unitig can be missing in one haploid?

#670 yfukasawa closed 4 months ago
3
The genome size of p_ctg.fa is smaller than survey

#669 Pengzw0909 opened 5 months ago
2
"c" suffix on contigs

#668 tallnuttrbgv opened 5 months ago
1
Hifiasm Assembly Purging

#667 Kasturi0312 opened 5 months ago
2
Whether unitig will be filtered based on the hic signal of unitig

#666 qz1024 opened 5 months ago
2
False inserts over duplicated regions (TRBV12-3/4)

#665 FlexLuthORF closed 5 months ago
2
How to classify hifi reads into haplotype genomes? minimap2 did not work well

#664 DayTimeMouse opened 5 months ago
3
High Duplication in my Assembly...l3 (purge-dup) doesn't help much

#663 rolibudhwar opened 5 months ago
1
Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes

#662 gf777 opened 5 months ago
0
output GFA with J lines in scaffolding mode

#661 gf777 opened 5 months ago
0
Numerous spurious contig overlaps in assemblies

#660 dmacguigan opened 5 months ago
10
Issues with Hexaploid Assembly

#659 BioOmics opened 5 months ago
4
No further progress after generating *bin files

#658 Iven-gif opened 5 months ago
1
What is the strategy for Ultra-long ONT integration?

#657 polchan opened 5 months ago
11
fungi diploid assemble phasing errors

#656 Hanjiangna opened 6 months ago
0
In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".

#655 xujialupaoli opened 6 months ago
0
Consider separating source files from build and other files.

#654 isovic opened 6 months ago
0
Recreate p_ctg from p_utg

#653 diego-rt opened 6 months ago
4
Read error correction does not reduce the number of kmers present once, twice or three times

#652 chklopp opened 6 months ago
1
Interchromosomal misjoin

#651 Han-Cao opened 6 months ago
2
Resolving switching error (?)

#650 s-kyungyong opened 6 months ago
0
*.ovlp.bin file

#649 tianjio opened 6 months ago
1
Switch error on X and Y chromosome

#648 Lin-Yuying opened 6 months ago
2
Spend too long times to run hifiasm

#647 hcph opened 6 months ago
6
Basic Question About HiFi Input

#646 foreignsand closed 4 months ago
3
Empty haplotype 2 gfa files by ONT integration

#645 malearimond opened 6 months ago
1
missing 8Mb sequences in the assembly

#644 xzhoubayer opened 7 months ago
6
Ultra Long intergration failed: no output for UL kmer counting

#643 mvolar closed 6 months ago
3
line 8: 110334 Aborted(core dumped)

#642 yao-chenxin opened 7 months ago
4
Linux Aarch64 support

#641 martin-g opened 7 months ago
5
Is x20 of Hifi data enough to construct draft assembly of 6.5Gb genome?

#640 Jung19911124 opened 7 months ago
1
discontinuous assembly with shorter pacbio hifi reads but high coverage

#639 leqi0001 opened 7 months ago
2
In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal

#638 Magiclexfr opened 7 months ago
0
Hifi + Hi-c + ONT assembly fails

#637 pashapu43 opened 7 months ago
5
No haploid.gfa files output in trio-binning mode

#636 tzjingyang opened 7 months ago
3
Possible missing one haplotype in human assemblies

#635 woodoo46 opened 7 months ago
2
how to make the correct genome size estimation for allotetraploid species?

#634 RezwanCAAS opened 7 months ago
3
setting K parameter in yak

#633 DustinSokolowski closed 7 months ago
2
Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly？

#632 GLking123 opened 7 months ago
2
Question about the depth of ONT ultra-long reads

#631 chenchen-eng opened 8 months ago
1
Help!!! Segmentation fault (core dumped)

#630 ajkshdkjahdka opened 8 months ago
1

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