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chhylp123
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hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
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Tetraploid with high heterozygosity
#708
Liyong-Zhang
opened
5 days ago
0
Missing and Duplicated Buscos in diploid haplotype-resolved assemblies
#707
kbarslan
opened
5 days ago
0
a third of the hifi reads not present in gfa
#706
zhenzhenyang-psu
opened
6 days ago
0
Discard the output file reads *.ec.fa
#705
pailloufat-stack
opened
1 week ago
0
KMer Count is very skewed towards the beginning
#704
Furkan9015
opened
2 weeks ago
0
Change ptg*****l to ptg*****L.
#703
xiekunwhy
opened
3 weeks ago
0
large and discontinuous assembly results using only HiFi sequencing data
#702
biozzq
opened
3 weeks ago
0
How to further improve the busco completeness?
#701
oddguyeee
opened
3 weeks ago
0
hifiasm log file
#700
Samyuktha9624
opened
3 weeks ago
0
How to deal with extremely high mapping rate?
#699
oddguyeee
opened
1 month ago
3
How to deal with extremely high mapping rate?
#698
oddguyeee
opened
1 month ago
0
het peak -1 and second peak on kmer distribution plot missing
#697
desa-la
opened
1 month ago
3
How to replace a consensus reference with either haplotypes after asm?
#696
Isoris
opened
1 month ago
0
Clarification on the post-join step
#695
diego-rt
opened
1 month ago
0
Clarification on hifiasm (HiC)
#694
JHCCoder
opened
1 month ago
0
Telo option
#693
aabaricalla
opened
1 month ago
1
Use p_ctg.fa and a_ctg.fa to fill the gaps of hap1.fa and hap2.fa?
#692
DayTimeMouse
opened
1 month ago
0
Bus error problem
#691
chywish
opened
1 month ago
0
different size for diploid organisms with low heterozygosity levels
#690
Overcraft90
opened
1 month ago
0
Question regarding quality threshold for PacBio and ONT assembly
#689
s-t-calus
opened
1 month ago
0
Recommendations for HiFi Data Depth in Haplotypic and Polyploid Assemblies
#688
WangZhSi
opened
1 month ago
0
Which does GFA file contain sex chromosome derived sequences?
#687
Jung19911124
opened
1 month ago
0
issues with memory usage
#686
LaurenHuet
closed
3 weeks ago
0
Incomplete haplotype-level assembly with hic
#685
dandanWang2019
opened
1 month ago
0
Core dump related to usage -5 parameter
#684
rfinkers
opened
2 months ago
6
About running hifiasm
#683
qinPX
opened
2 months ago
1
how to estimate the homo-coverage for captured HiFi sequencing data
#682
wangBiojin
opened
2 months ago
0
Confused about large contigs with 'c' suffix during fungal genome assembly
#681
Hanjiangna
opened
2 months ago
0
Thoughts on using parental Hi-C reads for trio-binning?
#680
tzxiong
opened
2 months ago
0
Cannot run on HPC with older ubuntu version.
#679
ap1438
opened
2 months ago
1
Different size of hap1 and hap2
#678
shehongbing
opened
2 months ago
0
Hifiasm assembly results and run log issues
#677
majssssa
opened
2 months ago
0
Potential Translocation Assembly
#676
YutingSheep
closed
2 months ago
1
Question about the -5 parameter
#675
Iven-gif
opened
2 months ago
0
chimeras in long SSRs
#674
kevfengler227
opened
2 months ago
0
Running hifiasm with unsupported option gives segmentation fault
#673
smikkelsendk
opened
3 months ago
0
v0.15.3 hom-peak and het-peak error
#672
wuhuwuks
opened
3 months ago
2
assembly genome is bigger than survey, error log
#671
feiyu007
opened
3 months ago
1
output of partial phasing - some unitig can be missing in one haploid?
#670
yfukasawa
closed
2 months ago
3
The genome size of p_ctg.fa is smaller than survey
#669
Pengzw0909
opened
3 months ago
2
"c" suffix on contigs
#668
tallnuttrbgv
opened
3 months ago
1
Hifiasm Assembly Purging
#667
Kasturi0312
opened
3 months ago
2
Whether unitig will be filtered based on the hic signal of unitig
#666
qz1024
opened
3 months ago
2
False inserts over duplicated regions (TRBV12-3/4)
#665
FlexLuthORF
closed
3 months ago
2
How to classify hifi reads into haplotype genomes? minimap2 did not work well
#664
DayTimeMouse
opened
3 months ago
3
High Duplication in my Assembly...l3 (purge-dup) doesn't help much
#663
rolibudhwar
opened
3 months ago
1
Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
#662
gf777
opened
3 months ago
0
output GFA with J lines in scaffolding mode
#661
gf777
opened
3 months ago
0
Numerous spurious contig overlaps in assemblies
#660
dmacguigan
opened
3 months ago
10
Issues with Hexaploid Assembly
#659
BioOmics
opened
3 months ago
4
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