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Updated frequencies make use of little 'g' naming. Implement check for alleles contained within various 'g' groups for linkage disequilibrium matches.
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@kosoegawa Could you provide a description of your primary use case (intended utilization) for this software? I'd like to update the README.md with it and ensure there is clarity of purpose. Without…
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The BC linkage reference data set (http://en.wikiversity.org/wiki/HLA/Linkage_Disequilibrium/B-C_Blocks) contains the following:
B_07:02:01 DRB1_15:14 3.2
Presumably, this is meant to be C in…
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Just the paper we were looking for!
http://www.ncbi.nlm.nih.gov/pubmed/23541343
Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and charact…
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I used 3.11.0 database version.
In nonCwdWarnings.log, I got the following messages:
WARNING - Allele: HLA-DQB1_02:02 not in the CWD list for HLA DB: HLADB3110
WARNING - Allele: HLA-DPB1_09:01 not in…
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Current implementation uses a flat GL String structure, ultimately decomposing into lists of alleles using delimiters. This is sufficient for purposes of reporting on Linkage Disequilibrium, but may …
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The analysis of linkage disequilibrium (p.10/11) can be improved. The discussion contains some misleading statements; for example, linkage disequilibrium does not depend only single-site allele freque…