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Hello,
This is more of a question than an issue, but I would like to run velocyto on bulk, 100x100 RNA-seq. I have 6 samples currently, all with >30m reads. Is there any particular way you would su…
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Hello Prof. Greg Ver Steeg,
I want to compute MI between two high dimensional continues time varying signal. their dimension are 39 and 300. It seems like this toolbox is not suitable for that. do …
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Hello thanks for developing this interesting tool!
I'm preparing a meta-analysis, and I wanted to explore the eukaryotic component of the microbiome with EukDetect. However, after reviewing the doc…
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Mostly copied from a message in slack, but wanted to preserve it here.
Would it make sense to do the statistics/processing to generate the data for the scores and loadings on the server in R, then …
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Hi all,
Right now we have two layers in the scanpy API. The top layer consists of the major modules like `pp,pl,tl` as well as the smaller ones like `queries,get,datasets`. In addition, we have som…
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@rbalshaw @farnushfarhadi
- the last commit: [7a30286](https://github.com/STAT540-UBC/team_Methylation-Badassays/commit/7a30286281644562c4e6f025d14ca0f983541c62)
(edit 1, typo removed: [7bd8ad2](htt…
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Hi,
Thank you for the amazing tool.
I installed sc-atlasing-toolbox and tried to run provided `run_example.sh`. I want to use it to test the environment and the example data is default data. Howe…
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The convenience functions for `DimPlot` through `SpecificDimPlot` (namely, `PCAPlot`, `TSNEPlot`, and `UMAPPlot`) rely on false assumptions.
_Example_: Try running `Seurat::UMAPPlot` (specifying th…
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So a couple things that came up in our meetings were:
- That time-course data would be very useful
- What new algorithms may have corrected the problems in SPADE?
I just found a paper with time-cours…
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Last summer, I took over maintenance of the `ggbiplot` package, originally by Vincent Yu. Source is at https://github.com/friendly/ggbiplot and docs at https://friendly.github.io/ggbiplot/
I did this…