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**Describe the bug**
A clear and concise description of what the bug is.
I have a similar problem to #579, but the error happens in IonQuant (please see the attached log file).
I am working wit…
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$ vendor/bin/psalm --init
```
Calculating best config level based on project files
Target PHP version: 7.2 (inferred from composer.json)
Scanning files...
Analyzing files...
░░Uncaught Invalid…
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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Hello,
We are trying to generate a spectral library using DIA-Umpire from DDA files that were acquired following a gas-phase-fractionation method for library generation (scanning 100m/z areas with …
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I am trying to run a search with FragPipe v15.0 including a custom ion series (defined as "y* C -249.0862"). When I include y* in fragment_ion_series, it gives the error "ion type must be one of [a, b…
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I don't know why this happens and why it specifically happens on /about/pd. It's something to do with loading the list of interesting cards? It's intermittent but I had four reports in quick successio…
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Hello, So I have python code as part of a project for downstream analysis. For it to work correctly, I need to obtain the list of scored peptides or PSMs including those that have been filtered out in…
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```
df
mutate(weekk = week(ymd(paste(yearr, monthh, dayy))),
datee = ymd(paste(yearr, monthh, dayy))) |>
filter(!is.na(datee)) |>
arrange(-desc(datee))
set.seed(1)
folds = df …
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Okay, sorry, not a bug per se, seems to be completely related to cold hardware not being ready for fast CV action for about 20 minutes. After that no glitchy behaviour anymore. Will monitor this furth…
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#### Summary:
There are two ways to use stan with python (CmdStanPy and Pystan). That might confuse new users (like myself), who would like to know which one they should use. The differences could …