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I'm trying to annotate a protein, MOG1, that binds to the yeast
ortholog of RAN, a GTPase, and the term that seems the most
appropriate specific description of its molecular function is
'guanyl-nucleo…
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It is very hard to find the term which used to corresond to the GO term "transcription factor activity"
Midori tells me this was renamed from GO:0003700
Because "transcription factor activity" was o…
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This FP link could be improved from
GO:2001141 regulation of RNA biosynthetic process
to a regulation of transcription term to improve the mappings
Reported by: ValWood
Original Ticket: [geneontol…
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What steps will reproduce the problem?
1. Run InterProScan in CONVERT mode against an XML input file, which contains
nucleic acid sequence annotations
2. Specify GFF3 as output format
3. Here is …
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Hi
I am a bit concerned about the top level GO terms for transcription factor activity.
1. GO:0000988 protein binding transcription factor activity
The definition states:Interacting selectively and …
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How would we deal with this one? I don't know where to start!
It is a regulation of protein expression via upregulation of a translationally silent transcript.
Would it be silly to have a term like:…
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Hi,
I'm looking at children of "nucleic acid binding", which are like this right now:
\- nucleic acid binding (GO:3676)
-\- DNA binding (GO:3677)
-\- RNA binding (GO:3723)
-\- translation factor act…
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Hi there,
My first pass for this request, for a new GO:'annealing activity' class as parent of the DNA, RNA, and DNA/RNA strand annealing activity classes, seemed simple enough. As with my other req…
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Kinetics of substrate analogue binding to an active site of an enzyme can be monitored to infer interaction with, eg, allosteric regulator. This is close to enzymatic assay but not exactly. It is also…
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galactose-specific flocculation
The non-sexual aggregation of single-celled organisms where cell-cell interactions are mediated by galactose
mannose-specific flocculation
The non-sexual aggregation o…