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Installed with pip from github repo
ERROR - Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/ruffus/task.py", line 751, in run_pooled_job_without_exceptions
regis…
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I am getting memory error when running ocrmypdf on a three page pdf which contains scanned images.
First two pages are full page scanned image text.
cmd: ocrmypdf
It is running on red linux cen…
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Hi,
I'm using a pipeline implemented by Ruffus that calls several other programs. I'm getting an error when Ruffus calls "bamM make".
This error only occurs when the data is stored on some parts of…
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@AndreasHeger it seems the tests are failing due to a kill issue
```
The command "travis_wait 30 ./install-devel.sh --install --test --use-repo ." exited with 137.
```
I assume this is because…
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I have a small ruffus pipeline that was previously ran without the need for a configuration file. However, when I try to run it using the new CGAT core it complains with the following error:
```
…
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When I run
sga-align --name celegans.pe assemble.m75-contigs.fa s_6_1.fastq.gz s_6_2.fastq.gz
Who can help me ?
Thanks
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First of all, great work!
I downloaded the core code and ran the tests and found the following errors.
tldr: all of those related to `drmaa.errors.DeniedByDrmException: code 17: error: no suitable q…
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I have encountered an error when running fastqc_screen. I see @AndreasHeger made some changes last week. Its stating that the outdir is missing from the dictionary (and it is). However, when I try to …
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I'm working on https://github.com/Pylons/hupper. It's a forking process monitor. I've tried a lot of permutations of pytest-cov and haven't found any success.
The process hierarchy is this:
```
…
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```
$ tesseract -v
tesseract 4.0.0-beta.1-370-g8b64
leptonica-1.76.0 libgif 5.1.4 : libjpeg 8d (libjpeg-turbo 1.5.3) : libpng 1.6.34+apng : libtiff 4.0.9 : zlib 1.2.11 : libwebp 1.0.0 : libopenjp2…
RNCTX updated
6 years ago