cgat-developers ruffus issues

cgat-developers / ruffus

CGAT-ruffus is a lightweight python module for running computational pipelines

MIT License

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issues

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Ruffus installation error (ModuleNotFoundError: No module named 'task')

#128 Aditya-Gautam20 opened 1 year ago
2
Patch to build with sphinx 4.2

#127 tillea opened 3 years ago
0
Fix doc build with Sphinx 4.

#126 QuLogic closed 3 years ago
0
Run tests on Python 3.9

#125 filippog closed 3 years ago
2
tox: install pytest

#124 filippog closed 3 years ago
0
PyPI sdist contains a file not found anywhere in the repo

#123 bnavigator opened 3 years ago
0
Memory hungry

#122 santids closed 3 years ago
1
OMP: Info #270: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.

#121 schultzm opened 4 years ago
0
Minor fix on line 22

#120 kant closed 4 years ago
0
Relative paths in history

#119 alexmemory opened 4 years ago
0
setup.py: Use GitHub for download_url

#118 jayvdb closed 4 years ago
0
Discovery of valid parameters for OO-syntax

#117 FrithiofJensen opened 4 years ago
0
drmaa errors- resubmit/retry

#116 cchng opened 4 years ago
0
Missing tags for 2.8.2 and 2.8.3

#115 scarabeusiv opened 5 years ago
0
test: Use sys.executable

#114 jayvdb closed 5 years ago
0
Ah file check retry

#113 AndreasHeger closed 5 years ago
0
Output CWL/WDL for a workflow

#112 AndreasHegerGenomics opened 5 years ago
0
[architecture] Specify pipeline in task_decorator

#111 shouldsee opened 5 years ago
10
Make doc/conf.py Python 3 compatible.

#110 QuLogic closed 5 years ago
0
Ac doc changes

#109 Acribbs closed 5 years ago
0
Ac doc changes

#108 Acribbs closed 5 years ago
2
Ac doc changes

#107 Acribbs closed 5 years ago
0
Slurm requirements

#106 radaniba closed 5 years ago
1
Time stamps not updating on rerun tasks

#105 IanSudbery closed 5 years ago
1
Test suite consumes an extraordinary amount of memory

#104 tillea opened 5 years ago
4
Fix python3.7 sadness due to __future__ not being imported at the begin of the file

#103 LocutusOfBorg closed 6 years ago
1
Test_shorten_filenames_encoder: enter deep enough subdir

#102 xnox closed 6 years ago
1
ruffus 2.8.0 does not work with gevent >= 1.2

#101 AndreasHeger closed 6 years ago
0
use asyncio to manager workers

#100 AndreasHeger opened 6 years ago
2
gevent as process_manager and jobs_limit are incompatible

#99 AndreasHeger closed 6 years ago
0
Remove unnecessary shebangs.

#98 QuLogic closed 6 years ago
1
Fix Python 3.7 and enable testing on it

#97 QuLogic closed 6 years ago
1
Use collections.abc when available.

#96 QuLogic closed 6 years ago
1
Fix sphinx.ext.mathjax: other math package is already loaded

#95 QuLogic closed 6 years ago
1
www.ruffus.org.uk shows registrar page for some links

#94 ghost opened 6 years ago
13
task.py: Python 3.7 compatibility

#93 ilovezfs closed 6 years ago
1
Remove functions deprecated in Python 3.7

#92 jbarlow83 closed 6 years ago
2
OO syntax with split using keyword arguments is broken

#91 jbarlow83 opened 6 years ago
1
Install fails on Python 3.7

#90 jbarlow83 closed 6 years ago
1
use travis build matrix for tests

#89 AndreasHeger closed 6 years ago
0
Add testing for py35 and py36

#88 AndreasHeger closed 6 years ago
0
reformat code to pep8

#87 AndreasHeger closed 6 years ago
0
Investigate if tests could be run in pytest

#86 AndreasHeger closed 6 years ago
6
Ah add gevent pool compatibility

#85 AndreasHeger closed 6 years ago
1
Make ruffus compatible with gevent Pool

#84 AndreasHeger closed 6 years ago
1
Unable to use files with special character in their names

#83 codemeleon opened 6 years ago
0
can one iterate over files in a zip file?

#82 chananshgong opened 6 years ago
1
Do not run tasks with jobs_limit==1 in the multiprocessing.Pool when multiprocessing is enabled

#81 Jerry-Ma opened 7 years ago
0
Obsolete references to Google Code

#80 jwilk opened 7 years ago
0
Fix typo in sys.hexversion comparison

#79 jwilk closed 6 years ago
1