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Enable near realtime search in Lucene without external
dependencies. When RAM NRT is enabled, the implementation adds a
RAMDirectory to IndexWriter. Flushes go to the ramdir unless
there is no availab…
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For notifying Jody of writing updates as the thesis progresses.
Access the rough thesis document from the readme, documents folder, or using the following link:
https://github.com/kurtisanstey/pro…
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Hello! This is a very cool project!
I have a few questions related to using `jax-md` for condensed matter MD, in particular related to computing the stress. I'll give some context below, feel free …
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For datasets describing a solid 3-D volume, such as an MRI brain scan, it is very useful to be able to "cut" the volume to image its internals. e.g. something like the MATLAB [isocaps](http://uk.mathw…
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It would appear that Shears from other Mods, Including modified vanilla shears from apotheosis, either aren't recognized for the hives. This either forces the Hive to produce only vanilla honeycombs, …
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The x gantry being mounted to the y by means of 4 m3 bolts into thermal inserts isnt good enough the way the x rails mount into their own holder means when trying to tighten the belts you rack the x g…
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To test MPI, I modelled the gravitational collapse of a magnetised sphere. My runs were pure openMP (mislabelled as 'hybrid' on the line plots) and hybrid MPI+openMP (labelled as MPI). The attached…
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I attached a very rough checkpoint of my current patch, to get early
feedback. All tests pass, though back compat tests don't pass due to
changes to package-private APIs plus certain bugs in tests th…
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There's an instability in the inertial restraints, causing excess shear on the ligand. This happens once every several hundred thousand steps. Doing a force decomposition in the timemachine reveals a …
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Measure the performance for a fluid and a fluid with particle coupling, using the ESPResSo LB implementation on GPU single-precision and the walberla implementation on CPU double-precision (and single…