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Observed locally.
A Snakemake demo workflow and the corresponding batch pod finish successfully, but when creating the final report, there is an active fetching of style assets from CDN going on, …
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There seems to be a dependency problem when installing with PIP as mentioned in the readme:
```bash
$ pip install fairgraph
Collecting fairgraph
Using cached https://files.pythonhosted.org/packa…
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**Is your feature request related to a problem? Please describe.**
I have a complicated workflow where output, log, and benchmark files are computed based on several factors. This is complicated by …
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https://github.com/SpatialHackathon/SpaceHack2023/blob/57c47102da861408f946d00ab9b611a2a77eced4/method/SpiceMix/SpiceMix.py#L163-L174
https://github.com/SpatialHackathon/SpaceHack2023/blob/57c47102…
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* snakedeploy version: 0.3.0
* Python version: 3.10.1
* Operating System: Debian GNU/Linux 9
### Description
Would like to use snakedelopy with either a local git repository or an internal gitla…
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I can run the workflow on the exampleData to completion using "fusion" and "_transform" switch but when using "deconvolution" and "_transform" I get the following error message as soon as the job sta…
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Hi,
I am trying this :
```
module mrna_workflow:
snakefile: 'https://github.com/maxplanck-ie/snakepipes/blob/1.2.3/snakePipes/workflows/RNA-seq/Snakefile'
use rule * from mrna_workflow a…
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Hello,
I have a long running workflows, and want to report the progress of execution to an external dashboard.
It would be nice to have rule-level _onerror_/_onsuccess_ hooks so that a more gra…
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+ [ ] **change `Snakefile` files and paths from underscores to dashes**: In `virus.snakefile` I switched all the paths that I was in control over to dashes instead of underscores. The snakemake rule n…
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Given that a snakemake workflow is launched from panoptes, how would it be best to handle waiting for it? E.g., you could add some kind of queue with redis or celery, but on the other hand, we don't w…
vsoch updated
8 months ago