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snakemake
/
snakedeploy
deploy a snakemake pipeline directly from version control (under development)
Mozilla Public License 2.0
19
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8
forks
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no profile directory deployed along the workflow
#64
cmeesters
opened
1 day ago
0
`snakedeploy pin-conda-envs` hangs forever before deleting temporary output
#63
dlaehnemann
opened
2 months ago
1
IMP/FIX: snakedeploy considers/overwrites version dependecies in yaml-file
#62
angrybee
opened
4 months ago
0
chore: release 0.10.0
#61
github-actions[bot]
closed
4 months ago
1
feat: add method to obtain schemas from workflow repo
#60
johanneskoester
closed
4 months ago
0
chore: release 0.9.2
#59
github-actions[bot]
closed
4 months ago
0
chore: release 0.9.1
#58
github-actions[bot]
closed
10 months ago
1
chore: release 0.9.0
#57
github-actions[bot]
closed
10 months ago
1
chore: release 0.8.7
#56
github-actions[bot]
closed
10 months ago
0
Snakedeploy creates snakefile with broken path
#55
seankmartin
opened
1 year ago
0
chore: release 0.8.6
#54
github-actions[bot]
closed
1 year ago
1
chore: release 0.8.5
#53
github-actions[bot]
closed
1 year ago
1
fix: use conda package version parsing by obtaining conda version spec from github
#52
johanneskoester
closed
1 year ago
0
chore: release 0.8.4
#51
github-actions[bot]
closed
1 year ago
1
fix: add debugging code for conda env update subcommand
#50
johanneskoester
closed
1 year ago
0
Use config and schema from tags rather than default branch
#49
nickp60
opened
1 year ago
1
chore: release 0.8.3
#48
github-actions[bot]
closed
1 year ago
1
fix: better error handling when parsing package versions
#47
johanneskoester
closed
1 year ago
0
fix: shuffle conda envs before updating (this ensures that running this in a fallible github action cron job still leads to updating all envs from time to time)
#46
johanneskoester
closed
1 year ago
0
chore: release 0.8.2
#45
github-actions[bot]
closed
1 year ago
1
fix: various robustness improvements for conda env update mechanism
#44
johanneskoester
closed
1 year ago
0
chore: release 0.8.1
#43
github-actions[bot]
closed
1 year ago
1
fix: if nothing to commit, do not create PR
#42
johanneskoester
closed
1 year ago
0
chore: release 0.8.0
#41
github-actions[bot]
closed
1 year ago
1
feat: only update pinning if env was updated; ability to specify a regex for entity determination and adding labels when creating PRs from updated envs
#40
johanneskoester
closed
1 year ago
0
chore: release 0.7.2
#39
github-actions[bot]
closed
1 year ago
1
fix: various bug fixes in conda env update process
#38
johanneskoester
closed
1 year ago
0
chore: release 0.7.1
#37
github-actions[bot]
closed
1 year ago
1
fix: glob conda env files passed to related subcommands
#36
johanneskoester
closed
1 year ago
0
chore: release 0.7.0
#35
github-actions[bot]
closed
1 year ago
1
feat: if requested, automatically generate pull requests when updating conda envs
#34
johanneskoester
closed
1 year ago
0
chore: release 0.6.0
#33
github-actions[bot]
closed
2 years ago
1
feat: add subcommand for updating snakemake wrappers in given Snakefiles
#32
johanneskoester
closed
2 years ago
0
chore: release 0.5.0
#31
github-actions[bot]
closed
2 years ago
1
chore: release 0.4.0
#30
github-actions[bot]
closed
2 years ago
1
feat: add subcommands to update and pin given conda environment definition files
#29
johanneskoester
closed
2 years ago
0
docs: Add conda/mamba install instructions
#28
tdido
closed
2 years ago
0
feat: test of adding Gitlab provider
#27
vsoch
closed
2 years ago
10
using snakedeploy with repos not on github
#26
nate-d-olson
opened
2 years ago
24
chore: release 0.3.0
#25
github-actions[bot]
closed
2 years ago
1
chore: release 0.2.2
#24
github-actions[bot]
closed
2 years ago
0
fix: Removing quotes from around snakefile in use_module template
#23
vsoch
closed
2 years ago
1
snakedeploy generates a Snakefile with syntax errors:
#22
mrvollger
closed
2 years ago
3
chore: release 0.2.1
#21
github-actions[bot]
closed
2 years ago
1
fix: minor rephrasing of CLI help.
#20
johanneskoester
closed
2 years ago
0
chore: release please workflow
#19
johanneskoester
closed
2 years ago
0
Use github marker for deployment.
#18
johanneskoester
closed
2 years ago
0
Add subcommand for conda env version and wrapper bumping
#17
johanneskoester
opened
3 years ago
0
`--use-singularity` broken?
#16
nikostr
closed
3 years ago
1
Adding versioneer
#15
vsoch
closed
3 years ago
2
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