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For a very different interface to historical texts see the [UK Medical Heritage Library](https://ukmhl.historicaltexts.jisc.ac.uk/home).
![historical_texts](https://cloud.githubusercontent.com/asse…
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In the spec it appears that inputs are only allowed to be of the form:
```
{
"url": "s3://my-object-store/file1",
"path": "/data/file1"
}
```
Implying inputs must only be files.
…
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## **Describe the bug**
Hi team,
I tried to peak-call using input files as dedupped BAM files. It worked initially for 1 sample (2 replicates), but not for the second sample.
## **OS/Platform**…
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To support #1. Please include any version information and links in the PR, if possible.
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There have been many requests over time to provide data on CPU, memory, and disk usage.
In an ideal world this would be a rich time series of data, in a less ideal world this would be max with a c…
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I set up a heavily scattered (~1000x) workflow to run overnight on my local machine (Mac OS Catalina, Intel hardware). The machine is set up to never sleep and was connected to AC power. My Cromwell c…
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## **Describe the bug**
The issue is that the pipeline does seem to accept the "samtools_mem_gb" parameter, which is something that the pipeline
authors have defined. The other is that there is a li…
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:cool:
### :pushpin: Explain the Request
This is low priority, but I just realized that the user does not have the ability to change SISTR optional inputs for the various TheiaProk workflows sin…
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## **Describe the bug**
When running the pipeline on SCG, it consistently hangs on the line that reads "task=chip.read_genome_tsv:-1, retry=0, status=WaitingForReturnCode". I have changed the JDK ver…
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We are running joint-discovery-gatk4 in slurm with Cromwell 46.
Only a small fraction of the shards are being processed concurrently.
What adjustments can be made to process more or all shards …
ghost updated
4 years ago