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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jhammelman/spatzie
Confirm the following by editi…
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https://mp.weixin.qq.com/s/qhro-3gMQSnBj3aStbS1Hg
ixxmu updated
3 years ago
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* crispector version: conda version
* Python version: 3.7
* Operating System: Ubuntu 18.04.5
### Description
Are mock files required? Is it possible to run without mock files?
### What I …
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Hello Torsten,
I am getting this error with Prokka 1.12, and I can't figure out what is the cause. Your help will be much appreciated. Thanks.
[16:42:05] Using genetic code table 1.
[16:42:05] Lo…
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Hello, I am following the [preprocessing notebook](https://github.com/YosefLab/Cassiopeia/blob/refactor/notebooks/preprocess.ipynb) in the refactor branch with my own GESTALT data. I believe it has be…
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Hi CRISPResso team,
Firstly, thank you for providing this useful software!
I am analysing 300 bp paired end reads from a CRISPR/Cas9 experiment targeting the exon of a single gene. I have succes…
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Aim: improve the maintainability of the project catalogue, allowing it to grow without causing an increasing amount of development overhead. Currently, it is populated via a manually run script that c…
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Hello! Thanks for this great analysis pipeline. I am looking forward to using it in an upcoming 10X experiment, and was working through your provided 10X example when I ran into this error:
```
ro…
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name = 'MAGeCK-VISPR'
version = '0.5.5'
homepage = 'https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0843-6'
description = """High-throughput CRISPR screens have shown great pr…
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For the analysis pipeline
- [x] Identify one plate barcode per cell line @gwaygenomics
- [x] Retrieve the `Experiment.csv` file for any one image in each of the 3 plates e.g. https://imaging-plat…