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**Hello Tim and team,**
**As always thanks for your excellent work. I am in the process of using Signac to analyze some scATAC data and found the ClosestFeature function gave the following error:**
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Hi,
i am getting some error while generating diffmeth report.
it is due to non-standard chromosomal names in the bed file i think.
But not really sure which script file must be edited to ti…
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mouse_brain
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Hi,
I'm using the WNN analysis vignette (https://satijalab.org/seurat/v4.0/weighted_nearest_neighbor_analysis.html) to analyze our 10x multimodal (ATAC+RNA) PBMC data and did the annotati…
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Hi Tim,
I am trying to run `CreateChromatinAssay` on an ATAC matrix of dimensions (305187,23838), which should be at most 305187 * 23838*8 / 1e9= 58GB in a non-sparse matrix format. I am however runn…
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I have installed the current version of Signac ( Signac_0.2.5) and trying to perform Human [PBMCs vignette](https://satijalab.org/signac/articles/pbmc_vignette.html) as practice run. However, when I …
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Many papers made nicer coverage plots directly from bam/bw within a genome interval, not just screen shot of igv interface.
I have a relevant script, now can only plot the average profile of input…
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Hi Tim,
I'm getting the following error running FindIntegration Anchors.
```
> anchors
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Nanostring-Biostats/NanoStringNCTools
Confirm the…
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In working through the 'Analyzing PBMC scATAC-seq' vignette with my own data generated using cellranger-atac count, I run into the following error when calling the CreateChromatinAssay() function:
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