elsasserlab labcode issues

elsasserlab / labcode

Utils to perform frequent data analyses in the lab.

GNU General Public License v3.0

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Wigglescout integrate

#102 cnluzon closed 2 years ago
1
temporary version issue with R 4.0+

#101 shaorray opened 3 years ago
0
sparse bw error in rsamtools summary

#100 shaorray opened 3 years ago
8
bw_heatmap "labels" argument

#99 YuyingCh opened 3 years ago
1
Allow zero flanking region for stretch mode profiles and heatmaps

#98 cnluzon opened 3 years ago
0
plot_bw_profile does not color error bar with custom colors

#97 cnluzon opened 3 years ago
0
Couldn't find the function "bw_heatmap" in my local r package

#96 YuyingCh closed 3 years ago
2
Fix stats functions with named GRanges

#95 cnluzon closed 3 years ago
0
Stats can return GRanges objects

#94 cnluzon closed 3 years ago
0
Vignettes

#93 cnluzon closed 3 years ago
0
Convert bedfile parameter to a more generic one that accepts GRanges

#92 cnluzon opened 3 years ago
0
Pass selection parameter to plot bins and bed functions

#91 cnluzon opened 3 years ago
0
plot_bw_bins_violin crashes with no default highlight_color value

#90 cnluzon opened 3 years ago
1
Plot heatmap function

#89 cnluzon closed 3 years ago
0
Slight bin discrepancy with seqplots

#88 cnluzon closed 3 years ago
0
Heatmap values calculation on bw_heatmap

#87 cnluzon closed 3 years ago
0
Scatterplot 2d histogram version

#86 cnluzon opened 3 years ago
0
Color parameter in plots

#85 cnluzon closed 3 years ago
1
Labels parameter fix

#84 cnluzon closed 3 years ago
0
Deseq plot functions

#83 cnluzon opened 3 years ago
0
Plot differential analysis results

#82 cnluzon opened 3 years ago
2
Supported reference genome chrom sizes as internal data

#81 cnluzon closed 3 years ago
0
Running replicates statistics on bins and bed files

#80 cnluzon closed 3 years ago
2
download from URL in calculate_bw_profile

#79 cnluzon closed 3 years ago
0
URL check and download for bw_ranges

#78 cnluzon closed 3 years ago
0
Middle parameter on bw_profile in stretch mode

#77 cnluzon closed 3 years ago
0
bw_bed_plot 'stretch' customization

#76 simonelsasser closed 3 years ago
1
Loading files from remote url

#75 simonelsasser closed 3 years ago
0
Setting limits without dropping datapoint

#74 simonelsasser opened 3 years ago
2
Trim by quantile

#73 shaorray closed 3 years ago
0
bw_bed refactor

#72 cnluzon closed 3 years ago
0
bw_bed crashes when aggregate_by and background bw files are provided

#71 cnluzon closed 3 years ago
0
bw_bins warnings: failed to summarize range

#70 cnluzon closed 3 years ago
0
Create mini dataset for tests of functions that use bwtools

#69 cnluzon opened 3 years ago
0
bw_label parameter renamed to labels

#68 cnluzon closed 3 years ago
0
Major tidy up of current code base

#67 cnluzon closed 3 years ago
0
plot_bw_bins_violin parameter bw_label inconsistency

#66 cnluzon closed 3 years ago
0
Bwplot tests

#65 cnluzon closed 3 years ago
0
bw_bed fix computing background

#64 cnluzon closed 3 years ago
0
R_CMD_CHECK runs very slow in MacOS latest

#63 cnluzon opened 3 years ago
3
add automated testing for bwplot

#62 cnluzon closed 3 years ago
0
bw_bed normalized to background on aggregate_by=NULL not implemented

#61 cnluzon closed 3 years ago
0
test_bwtools now tests for normalization to background

#60 cnluzon closed 3 years ago
0
Naming conventions for parameters and functions unified

#59 cnluzon closed 3 years ago
0
Add labels parameter to profile plot

#58 cnluzon closed 3 years ago
0
remove extension from default labels

#57 cnluzon closed 3 years ago
0
bwtools functions subsample parameter

#56 cnluzon opened 3 years ago
0
Percent of Y variance explained by X

#55 shaorray opened 3 years ago
0
bwtools refactored to calculate backgrounds

#54 cnluzon closed 3 years ago
0
explicitly check if reference annotation and bigwig files match

#53 cnluzon opened 3 years ago
1