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elsasserlab
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labcode
Utils to perform frequent data analyses in the lab.
GNU General Public License v3.0
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Fix issue 51
#52
cnluzon
closed
4 years ago
0
summary_heatmap crashes when no out_file provided
#51
cnluzon
opened
4 years ago
0
move bg normalization to bwtools
#50
cnluzon
closed
4 years ago
0
Plot functionality wrapping main functions
#49
cnluzon
closed
4 years ago
0
bin size parameter should always have the same name
#48
cnluzon
closed
4 years ago
0
bw_profile parameter fix
#47
cnluzon
closed
4 years ago
0
NAMESPACE and documentation updated
#46
cnluzon
closed
4 years ago
0
Bigwig profile over BED functionality
#45
cnluzon
closed
4 years ago
0
file input explicitly tested
#44
cnluzon
closed
4 years ago
0
License GPLv3
#43
cnluzon
closed
4 years ago
1
bw_bed does not handle empty bw file list
#42
cnluzon
closed
4 years ago
1
aggregating fix
#41
cnluzon
closed
4 years ago
0
default path for reports outputs in R installation folder
#40
cnluzon
opened
4 years ago
0
include profile plots from bw and bed
#39
cnluzon
closed
4 years ago
0
automated templated reports with parameters
#38
cnluzon
closed
4 years ago
0
Bwbed fix
#37
cnluzon
closed
4 years ago
0
Use files from remote location (webexport)
#36
simonelsasser
closed
4 years ago
3
specify format in importing bed files
#35
cnluzon
opened
4 years ago
0
correspondence between columns and filenames broken for special chars
#34
cnluzon
closed
4 years ago
0
include natural sort of bedfile labels as default
#33
cnluzon
closed
4 years ago
0
bw_bed
#32
simonelsasser
closed
4 years ago
9
Template file for summarized heatmaps with bigwig and bed files
#31
cnluzon
closed
4 years ago
0
markdown notebook templates on sample analyses
#30
cnluzon
opened
4 years ago
0
CI deployment test: installing all package dependencies takes long
#29
cnluzon
closed
4 years ago
1
testing: replace temporary files with mock
#28
cnluzon
opened
4 years ago
0
True mean calculation and testing for all aggregation functions
#27
cnluzon
closed
4 years ago
0
Unit testing for bwtools
#26
cnluzon
closed
4 years ago
0
seq levels need to be sorted
#25
cnluzon
closed
4 years ago
0
bw_bed aggregator should be true mean by default
#24
cnluzon
closed
4 years ago
0
bwtools parameter consistency on aggregating functions per locus and global
#23
cnluzon
closed
4 years ago
0
Fix on sorting bed labels
#22
cnluzon
closed
4 years ago
0
mcols<- works only if rtracklayer is loaded
#21
cnluzon
closed
4 years ago
1
plotting functionality for bw files
#20
cnluzon
closed
4 years ago
1
CI template
#19
cnluzon
closed
4 years ago
1
elsasserlib on uppmax
#18
simonelsasser
opened
4 years ago
2
install_github('elsasserlab/labcode', subdir='elsasserlib', build_vignettes = TRUE) fails
#17
simonelsasser
closed
4 years ago
2
bioconductor dependencies are not automatically installed
#16
cnluzon
opened
4 years ago
0
fixed package dependencies
#15
cnluzon
closed
4 years ago
0
lighter sample dataset plus doc
#14
cnluzon
closed
4 years ago
0
Documentation fix + minor import warnings
#13
cnluzon
closed
4 years ago
0
Style fix to comply better with standard
#12
cnluzon
closed
4 years ago
0
[stat/plot] PCA comparison of two matrices
#11
shaorray
closed
4 years ago
0
[plot] igv profile alternative
#10
shaorray
closed
4 years ago
9
Add files via upload
#9
shaorray
closed
4 years ago
4
include small dataset in the package
#8
cnluzon
closed
4 years ago
0
stats and effect size
#7
cnluzon
opened
4 years ago
0
plotting basic functions for bigWig and bed files
#6
cnluzon
closed
4 years ago
0
elsasserlib: automated tests + CI
#5
cnluzon
closed
4 years ago
0
simplifying API by adding multi-bwfile support to bw_bins and bw_bed
#4
cnluzon
closed
4 years ago
0
unify signatures for bw_bins / bw_bed
#3
cnluzon
closed
4 years ago
0
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