issues
search
elsasserlab
/
labcode
Utils to perform frequent data analyses in the lab.
GNU General Public License v3.0
0
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Wigglescout integrate
#102
cnluzon
closed
2 years ago
1
temporary version issue with R 4.0+
#101
shaorray
opened
3 years ago
0
sparse bw error in rsamtools summary
#100
shaorray
opened
3 years ago
8
bw_heatmap "labels" argument
#99
YuyingCh
opened
3 years ago
1
Allow zero flanking region for stretch mode profiles and heatmaps
#98
cnluzon
opened
3 years ago
0
plot_bw_profile does not color error bar with custom colors
#97
cnluzon
opened
3 years ago
0
Couldn't find the function "bw_heatmap" in my local r package
#96
YuyingCh
closed
3 years ago
2
Fix stats functions with named GRanges
#95
cnluzon
closed
4 years ago
0
Stats can return GRanges objects
#94
cnluzon
closed
4 years ago
0
Vignettes
#93
cnluzon
closed
4 years ago
0
Convert bedfile parameter to a more generic one that accepts GRanges
#92
cnluzon
opened
4 years ago
0
Pass selection parameter to plot bins and bed functions
#91
cnluzon
opened
4 years ago
0
plot_bw_bins_violin crashes with no default highlight_color value
#90
cnluzon
opened
4 years ago
1
Plot heatmap function
#89
cnluzon
closed
4 years ago
0
Slight bin discrepancy with seqplots
#88
cnluzon
closed
4 years ago
0
Heatmap values calculation on bw_heatmap
#87
cnluzon
closed
4 years ago
0
Scatterplot 2d histogram version
#86
cnluzon
opened
4 years ago
0
Color parameter in plots
#85
cnluzon
closed
4 years ago
1
Labels parameter fix
#84
cnluzon
closed
4 years ago
0
Deseq plot functions
#83
cnluzon
opened
4 years ago
0
Plot differential analysis results
#82
cnluzon
opened
4 years ago
2
Supported reference genome chrom sizes as internal data
#81
cnluzon
closed
4 years ago
0
Running replicates statistics on bins and bed files
#80
cnluzon
closed
4 years ago
2
download from URL in calculate_bw_profile
#79
cnluzon
closed
4 years ago
0
URL check and download for bw_ranges
#78
cnluzon
closed
4 years ago
0
Middle parameter on bw_profile in stretch mode
#77
cnluzon
closed
4 years ago
0
bw_bed_plot 'stretch' customization
#76
simonelsasser
closed
4 years ago
1
Loading files from remote url
#75
simonelsasser
closed
4 years ago
0
Setting limits without dropping datapoint
#74
simonelsasser
opened
4 years ago
2
Trim by quantile
#73
shaorray
closed
4 years ago
0
bw_bed refactor
#72
cnluzon
closed
4 years ago
0
bw_bed crashes when aggregate_by and background bw files are provided
#71
cnluzon
closed
4 years ago
0
bw_bins warnings: failed to summarize range
#70
cnluzon
closed
4 years ago
0
Create mini dataset for tests of functions that use bwtools
#69
cnluzon
opened
4 years ago
0
bw_label parameter renamed to labels
#68
cnluzon
closed
4 years ago
0
Major tidy up of current code base
#67
cnluzon
closed
4 years ago
0
plot_bw_bins_violin parameter bw_label inconsistency
#66
cnluzon
closed
4 years ago
0
Bwplot tests
#65
cnluzon
closed
4 years ago
0
bw_bed fix computing background
#64
cnluzon
closed
4 years ago
0
R_CMD_CHECK runs very slow in MacOS latest
#63
cnluzon
opened
4 years ago
3
add automated testing for bwplot
#62
cnluzon
closed
4 years ago
0
bw_bed normalized to background on aggregate_by=NULL not implemented
#61
cnluzon
closed
4 years ago
0
test_bwtools now tests for normalization to background
#60
cnluzon
closed
4 years ago
0
Naming conventions for parameters and functions unified
#59
cnluzon
closed
4 years ago
0
Add labels parameter to profile plot
#58
cnluzon
closed
4 years ago
0
remove extension from default labels
#57
cnluzon
closed
4 years ago
0
bwtools functions subsample parameter
#56
cnluzon
opened
4 years ago
0
Percent of Y variance explained by X
#55
shaorray
opened
4 years ago
0
bwtools refactored to calculate backgrounds
#54
cnluzon
closed
4 years ago
0
explicitly check if reference annotation and bigwig files match
#53
cnluzon
opened
4 years ago
1
Next