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These are included here as a group for completeness.
These issues are tickets and commit changes before 2009 and includes work for Version 3.0
george zyvoloski emails May 2017 regarding V2.24 not …
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Issues added by bulk in conversion from Mercurial to github
These are fixed Issues edited from Release_notes_V3.1.0.txt
(Removed changesets not related to code fixes)
Version 3.1.0 Jan 29 2008 …
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#### Problem description
Hi everyone,
it seems there is a bug in the setting of the solver for running pFBA.
When 'cglpk' is passed as solver to pFBA a solution is returned where the steady-state…
JuBra updated
6 years ago
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I've had a query on the data request about the variable evspsbl, which has standard name water_evaporation_flux. The question is whether it should have a "positive" attribute set in the MIP tables? ([…
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Dear All,
**My code:**
```
library(devtools)
#install_github(username="euba", repo="bacarena")
library(BacArena)
data(Ec_core, envir = environment())
bac1 = Bac(model=Ec_core, type="E. coli1",l…
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How do we feel about this behavior? I for one wasn't expecting it, but I'm not sure what the best approach to fixing it would be. Do we always keep the DictLists sorted? Or do we respect order when sa…
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Hi all,
It seems that pFBA (cobra.flux_analysis.pfba(model)) does not return a similar objective function value to the one calculated with FBA (model.optimize()).
I am running cobrapy version 0…
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BioCro at US-NE1 with Ameriflux met. Couldn't get a successful run.
## Description
These were the warnings that I got for precipitation and soil water content.
Units not convertible for P with…
ghost updated
7 years ago
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### Summary of Issue:
As an example: @bchristo 's plant hydraulics routine, wants to add root-water to the total column water balance. The location of this addition is called in of clm_driver() …
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There is a problem with the summary method called on a model after doing pfba(). I get the following error message:
_OptimizationError: Likely no solution exists. Original solver message: Unable to…