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**1. What were you trying to do?**
I am trying to align reads to the hg19 graph.
Here is the command I am using:
```
vg map -i -f EU33_NI_ATACSeq_1_2-308169_S12_L001_I.fastq.gz -x hg19.xg -g hg19…
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I'd like to be able to align reads full length using the xdrop-aligner, but it only seems to work when the bandwidth is set to be the full width of the alignment.
```shell
vg construct -r 1mb1kgp/…
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Hi, does this work can predict metric depth ? i found infer.sh result is not metric depth,so o wonder if this work can get metric depth and if it can ,how to get it？ thank a lot
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The sequence at the end of the message is a simulated sequence from GRCh38. The true position is chr7:4124634-4126723. ngmlr-0.2.5 gives a split alignment. The longer alignment is correct with mapq=33…
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I have been trying to use the higher-sensitivity branch for running wfmash alignments on my data. The code seems to be much faster than the master for producing the alignments although gives me an err…
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- [x] report scaffold containing best hit per feature in genetic map
- [ ] extract features from reference annotations as pseudo genetic map
- [x] autodetect when to use gmap vs. gmapl
- [ ] tune t…
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New error when running taxonomy
**Command:**
cd $tmp
in_dir=/projects/cmi_proj/blood_microbiome/niaid/combined
out_root=$in_dir/shogun
align_dir=$out_root/wol_alignments
taxonomy=/projects/c…
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Hello rpvg team:
I've successfully gotten the .gamp file of the transcriptome file with vg mpmap and there was no problem at all. But when I run rpvg, I have this error:
Running rpvg (commit: cd51…
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### What are you working on?
I'm having trouble adding text color to text fields in my PDF documents using the `pdf-lib` library in my Angular project. Below is a snippet of my code for cont…