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I've had success with the installation up to this point. Nexflow-edge was installed by simply downloading and running the script, since we have newer Java 19 on the system. `nextflow run main.nf --d…
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**Submitting author:** @ParkvilleData (Babak Shaban)
**Repository:** https://github.com/ParkvilleData/MetaGenePipe/
**Branch with paper.md** (empty if default branch):
**Version:** v.1.0.0
**Editor:*…
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Hi all,
I am working on comparing alpha diversity of several gut type samples, recently discover the breakaway package!
I gone through several vignettes and tutorial (https://github.com/adw96/stam…
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We only have version 138 weights. 138.1 has been requested...
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Thanks very much for your paper on the workflow
I am trying to find bootstrap in my tree so that I can have it in my tree graph but I haven't been successful yet,
your advice is appreciated about …
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Hello
Thanks very much for sharing this course workflow for analysing microbiome studies.
Is there any possibility to let me know how to work with SPIEC-EASI code used for network analysis after…
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This isn't an issue per say, but I'm not entirely sure where to put this. We'd like to conduct analyses (particularly DESeq2 and heat maps) at the genus level, rather than the OTU level. I'm quite clu…
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@pvangay collecting some of your issues here
@mslarae13 you might be interested in this too but I don't have any specific requests
see
- [x] https://github.com/microbiomedata/sheets_and_friends…
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Hi,
We have been thinking on the topic of adding parameters as the fields of SE object. Since some parameters are generated by distribution functions(mostly uniform distribution for instance in [s…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD