spholmes F1000_workflow issues

spholmes / F1000_workflow

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Bad alloc... maybe bad alignment?

#42 otaviolovison opened 1 year ago
1
tree format?

#41 marwa38 closed 1 year ago
3
bootstrap in the tree?

#40 marwa38 closed 1 year ago
3
Alignment error

#39 XiongGZ opened 3 years ago
0
Problems with generating a phylogenetic tree

#38 Carlosgenetic-84 opened 3 years ago
9
Error in constructing a neighbor-joining tree

#37 psalinasbionostra1984 opened 3 years ago
1
Error in R code

#36 haruosuz opened 4 years ago
1
Issue in Creating Phylogenetic tree

#35 Joishy-T opened 4 years ago
9
Error learn question

#34 jellyfish1111 closed 5 years ago
2
Scale bar for tree using phangorn and phyloseq

#33 AMFBio opened 5 years ago
2
NMDS plot for 16s amplicon

#32 bioinfonext opened 5 years ago
5
Quality control of code

#31 cathreenj opened 5 years ago
6
question about the abundant unidentified ASVs

#30 xnus opened 5 years ago
2
Prevalence filtering issue

#29 cwshin opened 5 years ago
1
Effects of prevalence filtering on downstream analysis

#28 zefrieira opened 5 years ago
2
Component sample names do not match. Try sample_names().

#27 abalter closed 5 years ago
4
creating a legend for the graph under creating and plotting graphs

#26 Mdrexel2018 closed 5 years ago
6
creating and plotting graphs from Workflow for Microbiome data

#25 Mdrexel2018 closed 5 years ago
7
Problem with phangorn package in the revised workflow

#24 akalichen closed 6 years ago
7
Is "http://www.mothur.org" currently down?

#23 alitahir0 closed 6 years ago
5
Is "http://www.mothur.org" currently down

#22 alitahir0 closed 6 years ago
0
problem on order the rank

#21 chloelulu opened 6 years ago
4
DESeq2 variance stabilizing transformation

#20 csmiguel opened 6 years ago
1
alpha value structSSI hierarchical FDR

#19 csmiguel opened 6 years ago
1
How do you define contrasts in the hierarchical multiple testing?

#18 benkraj opened 7 years ago
3
do we expect step of constructing phen.tree take too long?

#17 DuyDN opened 7 years ago
1
Identifying outliers

#16 Ninahuadiy opened 7 years ago
6
Update testing script

#15 krisrs1128 closed 7 years ago
0
Hierarchical Testing

#14 Ninahuadiy closed 7 years ago
11
Are the mock files necessary?

#13 Ninahuadiy opened 7 years ago
1
MIMARKS_Data_combined.csv not created/downloaded

#12 padpadpadpad closed 7 years ago
6
Removing mergers[!grepl("Mock", names(mergers))] from makeSequenceTable()

#11 padpadpadpad closed 7 years ago
1
link to mothur miseq development data not working

#10 cmsmoo closed 7 years ago
11
Julia-update

#9 jfukuyama closed 7 years ago
1
bioinformatics R

#8 Brispark closed 7 years ago
1
download tar issue

#7 Brispark closed 7 years ago
1
Violin plots need different colors for each subplot?

#6 spholmes opened 7 years ago
1
Colors do not appear in prevalence plot any more

#5 spholmes opened 7 years ago
2
fix violin plots, errors

#4 joey711 closed 7 years ago
0
phyloseq part warning: is this normal?

#3 spholmes opened 7 years ago
15
2016-08-08-2200ECT

#2 joey711 closed 7 years ago
1
Problem with Trim and Filtering

#1 Fumm95 closed 7 years ago
1