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Currently `Creator` objects are written to the OMEX archive, but it would make sense to deploy these in the SBML file.
This is a follow up on issue #26
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## Expected Behavior
If an addin is inserted into a document, and `visibility=1` in taskpanes.xml in the docx file, the addin should auto install when the document is opened in Word Online.
![im…
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I would expect the following code to change the unit of a protein, this is however not the case:
```python
enzmldoc = EnzymeMLDocument.fromFile("EnzymeML_Lagerman.omex")
print(f'original unit {…
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Since OMEX files are binary, its hard to see the changes through Git. To make it easier for the curators and the community to see changes, it would be helpful to also save the individual files inside …
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---
id: vcell
version: 7.4.0.48
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.48/biosimulators.json
specificationsPatch:
version: 7.4.0.48
image:
url: …
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The metadata for `12119723` indicates license `CC0-1.0`. However, my understanding is that license information is not known for the VCell database. In that case, models should be considered to have no…
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SBML directory: https://github.com/virtualcell/vcdb/blob/main/published/biomodel/omex/sbml/
- Checked `100596964`, `12119723`
- Manifests: look good
- OMEX metadata/RDF files: missing; required for…
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Hi @jonrkarr , is the metadata inside the attached omex file compatible with your reader?
It's a small proof of concept file, just to catch early any issue.
I tested it and it passes the validation …
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We noticed a case where we expected a SED-ML file to be exported with the COMBINE archive, but only the CellML file was included in the archive.
- Workspace with SED-ML file: [workspace/5d7/@@file/…
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---
id: copasi
version: 4.36.260
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/d916c1dbae69b18118693be707efe64743e25485/biosimulators.json
specificationsP…