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EnzymeML
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PyEnzyme
🧬 - Data management and modeling framework based on EnzymeML.
BSD 2-Clause "Simplified" License
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Added motivational poem to the project
#69
haeussma
opened
1 day ago
0
Add celsius as unit
#68
haeussma
closed
2 months ago
0
PyEnzyme v2.0.0
#67
JR-1991
opened
3 months ago
0
Provide `citation.cff` for software citation
#65
JR-1991
opened
7 months ago
1
Missing Citation.cff file for pyEnzyme
#64
HendrikBorgelt
opened
7 months ago
1
#62 : use write.close rather than writer.save
#63
fbergmann
closed
12 months ago
0
Tests failing due to XLSXWriter save method not available
#62
JR-1991
closed
12 months ago
0
- fix reading to be compatible with newer versions of libsbml
#61
fbergmann
closed
1 year ago
1
PyYAML causing pip error fix
#60
JR-1991
closed
1 year ago
0
Enzyme ML spreadsheets should support 96 Well-plate design
#59
Vanry7
opened
1 year ago
10
Problems with data export from example file
#58
danolson1
opened
1 year ago
2
EnzymeML Excel spreasheets don't open
#57
danolson1
closed
1 year ago
3
Add identifier types to AbstractSpecies base class
#56
JR-1991
opened
1 year ago
9
ThinLayers do not work after installing due to missing module
#55
fbergmann
closed
1 year ago
0
Check if ID-attribute of replicate is unique to the assigned measurement
#54
haeussma
closed
1 year ago
3
Extend PyEnzyme to include stock solutions
#53
JR-1991
closed
1 year ago
3
Add message for printReactionSchemes when there are no reactions present
#52
JR-1991
closed
2 years ago
0
Added a new data type and updated example templates
#51
benjaminhadzovic
closed
2 years ago
0
Can't read in excel template if no SMILES or InCHI code is given
#50
benjaminhadzovic
closed
2 years ago
0
Can't read in data type "Conversion [%]" from template
#49
benjaminhadzovic
closed
2 years ago
3
Investigate test time outs in COPASI tests
#48
fbergmann
closed
2 years ago
2
Added Peak Area to Source and Spreadsheet
#47
JR-1991
closed
2 years ago
0
PySCeS ThinLayer: Fit multiple replicates, plot fit result
#46
jmrohwer
closed
1 year ago
0
Parameter values of zero are not saved to EnzymeML document (XML)
#45
jmrohwer
closed
2 years ago
1
How to send in omex archives to enzymemL read
#44
StephanM87
closed
2 years ago
5
Support simulation of EnzymeML Documents
#43
JR-1991
closed
2 months ago
2
Templatereader fails when optional arguments are empty
#42
JR-1991
closed
2 years ago
2
Correct structure in the REST API measurement-documentation
#41
StephanM87
closed
2 years ago
5
How to handle discreptency between initial_conc of reactants and first value of the respective measurement series?
#40
haeussma
closed
2 years ago
2
kineticLaw MathML not saved in SBML with binder or colab
#39
jmrohwer
closed
2 years ago
7
add `__version__` field to pyenzyme
#38
fbergmann
closed
2 years ago
0
Add a Codacy badge to README.md
#35
codacy-badger
closed
2 years ago
0
change import of thinlayers?
#34
fbergmann
closed
2 years ago
5
change the file header from """ docstring to # comment
#33
fbergmann
closed
2 years ago
0
writing documents fails because of encoding errors when writing the log file
#32
fbergmann
closed
2 years ago
5
How to attach files to the data model?
#31
StephanM87
closed
2 years ago
2
PyEnzyme 1.1.3
#30
JR-1991
closed
2 years ago
2
pyenzyme does not allow to change the units
#29
fbergmann
closed
2 years ago
3
`exportMeasurementData` cannot export both proteins and reactants
#28
fbergmann
closed
2 years ago
0
Write Creator informations to SBML file
#27
JR-1991
closed
2 years ago
2
REST API: Unit and creator entries do not appear in the EnzymeML documents
#26
StephanM87
closed
2 years ago
1
Changes in KineticParameter are not logged correctly in Thin Layers
#25
JR-1991
closed
2 years ago
2
TL_Pysces.write does not write out global parameters
#24
fbergmann
closed
2 years ago
4
core api should not use deprecated methods
#23
fbergmann
closed
2 years ago
0
update requirements.txt / setup.py
#22
fbergmann
closed
2 years ago
1
Type checking issue
#21
fbergmann
closed
2 years ago
3
Adapted PySCeS Thin Layer to BaseThinLayer
#20
JR-1991
closed
2 years ago
4
Support SpeciesReference without SBOTerm
#19
JR-1991
closed
2 years ago
1
Fix residual computation
#18
HannahDi
closed
2 years ago
0
PySCeS thinlayer needs for all reactants measurements
#17
HannahDi
closed
2 years ago
0
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