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There were past discussions about various privacy levels, but that never got formalized in any of the documents.
E.g. when matching via API or searching locally, PhenomeCentral will not report the ex…
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This issue is to report that [this workflow B query](https://github.com/NCATSTranslator/minihackathons/blob/main/2021-12_demo/workflowB/B.1a_DILI-three-hop-from-disease-or-phenotypic-feature_trapi.jso…
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This issue is to report that this [workflow B query](https://github.com/NCATSTranslator/minihackathons/blob/main/2021-12_demo/workflowB/B.1b_DILI_three-hop-from-disease-or-phenotypic-feature_trapi.jso…
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Primarily for Exomizer use case.
Calculating IC (and other metrics) currently only considers the ontology itself and does not include associations. If chosen, associations should be included as wel…
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As discussed [here](https://github.com/OBOFoundry/COB/issues/42#issuecomment-684181008), lets start the certainly painful discussion on where in the COB hierarchy phenotype (the biological condition, …
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To convert to valid proto files, we need to include package designations in the header.
Something like:
https://github.com/phenopackets/phenopacket-schema/blob/master/src/main/proto/phenopackets…
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Hi @paolaroncaglia @zoependlington
We are discussing at the HCA wrangler meetings the possibility of including phenotype observations in the `known_disease` field in order to represent clinicall…
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I'm making this issue as a way to keep track of papers that might be relevant to implement in microscopium.
New UMAP paper:
https://arxiv.org/abs/1802.03426
They test UMAP on lots of different …
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Hi,
I am new to mixed-effect models. I have a longitudinal phenotype data and every subject has different numbers of longitudinal measurements. All the covariates are not time-dependent. I am wonde…
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Hello!
I am performing multitrait analysis in an exploratory way after selecting traits based on the significant genetic correlation using LDSC. I performed MTAG analysis for those pairs of traits…