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Hi,
I am attempting to annotate a customized VCF file using NCBI's GFF and (fna) FASTA files for the Newcastle disease virus (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004786615.1/). However, …
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**UniProt UniRule (ID and label):**
GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEA with UR00063877
**Sequences with problematic annotation (ID…
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0065009 "regulation of molecular function"
* **Reason for deprecation**
We have discussed that this term an…
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@pmasson55 proposes that we change definition of the following terms to allow annotation of host proteins:
'biological process involved in interaction with host'
'biological process involved i…
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For example: [HERC2P9](https://platform.opentargets.org/search?q=herc2%20pseudogene%209&page=1&entities=target) or [AKAP17A](https://platform.opentargets.org/search?q=AKAP17A&page=1&entities=target) a…
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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### Discussed in https://github.com/google/flax/discussions/1390
Originally posted by **SauravMaheshkar** June 26, 2021
I'm working on a Flax implementation for [ProteinBERT: A universal deep-…
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Started from discussion on https://github.com/pombase/website/issues/2042
## Summary of what we discussed today
* Cons of current system:
* File naming and organisation might be improved
…
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### Description of the bug
I am running the most current version of @marchoeppner dev branch on Tower on a real dataset. The workflow passed repeat masking and produced the `consensi.fa` file but fai…
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* **ARBA rule (ID and label):**
GO:0140097 | catalytic activity, acting on DNA | IEA with ARBA00027986 | GO_REF:0000117
* **Sequences with problematic annotation (ID + gene/protein name):**
p…