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When installing SlicerRadiomics from extension manager, installation works, however, the module cannot be loaded due to an error with the pyYAML library. When you comment out `import pykwalify` in `fe…
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Profiling PyRadiomics using the brain1 testcase (256x256x25 voxels) with full-mask
- all features
- Original, LoG (sigma 1, 3 and 5), Wavelet (1 level, 8 decompositions)
Main bottlenecks:
- GLSZ…
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Dear all,
Thanks for your effort and making such a great repository. As a newbie, I wanted to know whether this package supports 2D images as well? I could not find any example in notebooks folder.…
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If I do something like
```python
extractor = RadiomicsFeaturesExtractor(...)
extractor.execute(image, mask, label=2)
```
I get the following error
```python
Calculating features with label: 2…
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checkMask essentially expects that image and mask geometry will match by calling Execute here: https://github.com/Radiomics/pyradiomics/blob/master/radiomics/imageoperations.py#L201
Thanks to Dev G…
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From an email exchange:
@fedorov:
> 2) ability to extend SegmentStatistics with extra quantitation
> plugins. It would be nice to be able to register new plugins with that
> module, and then ena…
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PET SUV calculation is based on phantom weight and injection time and should read these values from the header
```
OME NOTES on SUV and parameters of interest:
This is the first-pass implementati…
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ITK filter has SetNormalizeAcrossScale = false by default. Make sure this is corrected to True if needed when LoG is integrated into the new classes.
http://www.itk.org/Doxygen/html/classitk_1_1Lapla…
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@hugoaerts what do you want to have as the contact email? maybe a mailing list?
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https://circleci.com/gh/Radiomics/pyradiomics/66
Most of the failures can be resolved by adding baselines (features added by @JoostJM).
The only feature that is failing and is also implemented in ma…