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Hi, looking forward to using decoupleR, it looks very usefull!
I've tried to install the R library decouleR via conda
However eventhough the library seems to load the 'get_progeny' function isn't…
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Hello,
I really enjoy exploring/using pyscenic. Thank you for the great work! And I appreciate your help in figuring out my issue below:
I want to compare the AUC results (produced by AUCell) …
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Hello SCENIC,
Could you please explain a little bit about the meaning of `r.score > 8.0` in `names = list(map(op.attrgetter('name'), filter(lambda r: r.score > 8.0, regulons)))`? How shall I adjust…
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Hello, I recently upgraded from pySCENIC 0.11.0 to pySCENIC 0.11.2. With the previous version, I was able to follow the [full pipeline tutorial](https://github.com/aertslab/pySCENIC/blob/master/notebo…
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Hello SCENIC,
The tutorial shows how to display the motifs of `df_regulons.head()` , we're wondering whether it is possible to display a specific motif, for example, Atoh1?
Thanks!
Best,
YJ
`…
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Hi,
Thank you for the useful package.
In [Step 2](https://htmlpreview.github.io/?https://github.com/aertslab/SCENIC/blob/master/inst/doc/Step2_Regulons.html):
> ### 1.3 Keep only the motifs an…
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Is it possible to utilize output from [PANDA](https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda) for the initial GRN links instead of GENIE3 or GRNBoost2? At first glance, the …
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Hi,
I think I'm having many transcription factors with repression activity.
Is there a way to generate plots with the expression of target genes of a given TF to show this negative association?
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Hi @s-aibar , Thanks for the nice package. I got a problem when running plotRSS(rss). Attached error messages. Looking forwards to your suggestion.
```
> rssPlot 0.01 (dim: 25x7)
Error in file(f…
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Hi,
I don't think I've come across any threads for this. I was wondering if there are any tutorials/protocols for cross-species clustering conducted in the manuscript. I wanted to test this for mul…