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Apologies if this issue already exists, I couldn't find it from searching but there are many ways it might be listed!
This would be to generate a standardized sequence name during preprocessing, wh…
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Hey,
I am using the pipeline on SARS-CoV-2 Capture-Seq data (Illumina paired-end).
```bash
nextflow run rki-mf1/covPipe2 -r v0.5.1 --fastq fq_list.csv --list --kraken --update -profile slurm,…
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Hi,
Die SARS-CoV-2-Sequenzdaten_Deutschland.fasta.xz war im gestrigen Update nicht mit enthalten.
Gab es keine neuen Sequenzen oder ein Upload Problem?
Viele Grüße
David
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Hello,
I think there might be an issue with the parsing of the sc2rf output in the summary_report R Markdown Skript.
This Error just occurred today with v.0.4.3 and v0.5.1 of the pipeline, runnin…
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![Screenshot 2024-03-19 at 12 37 41](https://github.com/robert-koch-institut/Abwassersurveillance_AMELAG/assets/142669531/1758b23f-46af-4f19-956a-788323992cdd)
Loess_aenderung and einwohner have the …
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### Prerequisites
* probable any thermostat which can't handle on/off, at least Danfoss MT02650 (Z-Wave),
### Description
After a fresh start of Home Assistant a Better Thermostat entity, wh…
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The RKI published strange data today, so the data of the API is strange too!
The entire pandemic history has been deleted
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I think we should publish the genotype list with additional information (breeder, release year). Benjamin Wittkop should finally check the list.
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Ist mit Abhilfe zu rechnen? Wenn ja, wann?
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I recently started using the V100 on the ml partition of taurus again. With a very similar setup to what already ran, I got the following mallocMC error:
```
terminate called after throwing an insta…