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the [cocluster script](https://github.com/ctb/2017-sourmash-cluster/blob/master/cocluster.py) may be useful for people comparing the output of binning.
see also #459
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Multithreaded **renaming** for all sourmash signatures in a directory to their file names.
```bash
ls *.sig | parallel -j 64 'basename={}; basename_without_sig=${basename%.sig}; sourmash sig renam…
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I'm thinking of doing the command line for this snakemake app differently; right now I'm not using config files much, just the sample name. How does the below sound?
each command would be successiv…
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Firstly, I am in AWE of your work, and I hope to marry it with https://skewdb.org/ at my earliest convenience. This is database of GC skews of bacterial and archaeal chromosomes.
I downloaded http…
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compare/contrast with manifests and esp output formats from `sourmash sig manifest` - https://github.com/sourmash-bio/sourmash/pull/1837
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thinking through some of the gather issues revealed/discussed in https://github.com/sourmash-bio/sourmash/issues/2950, and also the bug in https://github.com/sourmash-bio/sourmash/issues/2825, and als…
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per [@LilyAnderssonLee review](https://github.com/pyOpenSci/software-submission/issues/129#issuecomment-1838233643)
>Refactoring duplicate code into helper functions to avoid redundancy and improve…
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I tried to follow the usage example outlined at https://dib-lab.github.io/kSpider/, but the instructions no longer work. Specifically, the indexing step seems to have changed from `kSpider index_kmers…
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our reviews are in over at https://github.com/pyOpenSci/software-submission/issues/129!!!
this is a placeholder that will (eventually) contain a checklist for addressing all of the reviewer commen…
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using some mgx colton was using for `sketchall` testing in https://github.com/sourmash-bio/sourmash/issues/2748:
data from `/home/baumlerc/download-seq/download-seq/fastq/`
```
total 23G
4.0G SR…