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I was confused by GO terms popped out in my GO analysis using enrichGO. For example, "GO:0141091: transforming growth factor beta receptor superfamily signaling pathway" was reported as one of the top…
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It feels like we need to cache NOMEN order in a table to address a lot of sort/ordering outside of SQL. Something like this:
* [x] Add a migration to build the table
```
table :nomenclatural_r…
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- [ ] seqprep
- [ ] trimmomatic
- [ ] evaluate https://github.com/common-workflow-language/workflows/blob/master/tools/trimmomatic-Dockerfile
- [ ] "biopython"
- [ ] hmmer
- [ ] evaluate http…
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Hey, thanks for the tool. How can I merge the output library of TEsorter with the repeatModeler repeat library to run RepeatMasker? Further, can I directly input the output library of TEsorter in Repe…
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Experimental update of FLOW in CLB of 2020 was replaced with the version from AC19 2023-01-26:
https://github.com/CatalogueOfLife/data/issues/503#issuecomment-1402005076
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The attached xml annotation file (Q9WVJ0.xml) failed to upload while using genome3d-api -o updateDomainPrediction. The corresponding error log is also attached for reference. From the error report, I …
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When we release an update to a family, it would be nice to check if the family has an SC or 'One' family variant. These families should be updated at the same time as well.
https://github.com/googl…
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I think it's important to contextualize diffexp results by what these genes _do_, biologically. There are multiple "levels" at which we could support this:
1) Just link out to wikigene / human prote…
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Hello Laurence, I am working with Claire Lehenaff on prophages, bacterial diversity and interactions in beverages fermentation context. We would try to investigate social genes in one of our specific …
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Some sources/sectors are missing a nomenclatural code which makes it difficult for rendering, but more importantly for querying for bad homonyms like accepted duplicate genera within the same code:
…