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We talked about this already, but I'd like to take action and update the Datastore where appropriate.
There are a number of `gene_models_main` GFFs that have the **Name** attribute starting with _g…
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**Scarabs of 2021-01-29**: fifth update since ac19
previous reports: https://github.com/CatalogueOfLife/data/issues/154
- [x] Version in Metadata stated as Version 2020-10-06 Received by COL: 2…
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I was confused by GO terms popped out in my GO analysis using enrichGO. For example, "GO:0141091: transforming growth factor beta receptor superfamily signaling pathway" was reported as one of the top…
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`Bacteria Cavalier-Smith, 2002` is the only kingdom with authorship. Better remove it via a decision?
https://www.catalogueoflife.org/data/taxon/B
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It feels like we need to cache NOMEN order in a table to address a lot of sort/ordering outside of SQL. Something like this:
* [x] Add a migration to build the table
```
table :nomenclatural_r…
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Hey, thanks for the tool. How can I merge the output library of TEsorter with the repeatModeler repeat library to run RepeatMasker? Further, can I directly input the output library of TEsorter in Repe…
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- [ ] seqprep
- [ ] trimmomatic
- [ ] evaluate https://github.com/common-workflow-language/workflows/blob/master/tools/trimmomatic-Dockerfile
- [ ] "biopython"
- [ ] hmmer
- [ ] evaluate http…
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Experimental update of FLOW in CLB of 2020 was replaced with the version from AC19 2023-01-26:
https://github.com/CatalogueOfLife/data/issues/503#issuecomment-1402005076
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When we release an update to a family, it would be nice to check if the family has an SC or 'One' family variant. These families should be updated at the same time as well.
https://github.com/googl…
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I think it's important to contextualize diffexp results by what these genes _do_, biologically. There are multiple "levels" at which we could support this:
1) Just link out to wikigene / human prote…