issues
search
EBI-Metagenomics
/
ebi-metagenomics-cwl
This repository contains the CWL description of the EBI Metagenomics pipeline
21
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Closed
#86
fplazaonate
closed
2 years ago
0
Taxonomic annotation is not consistent in metadata file
#85
fplazaonate
closed
2 years ago
1
Archive this repo?
#84
mr-c
opened
3 years ago
0
Missing required parameter
#83
Rradley
closed
4 years ago
0
switch to https://schema.org/version/latest/schema.rdf
#82
mr-c
closed
4 years ago
0
more EDAM
#81
mr-c
closed
6 years ago
0
Upgrade IPS to use a container
#80
mr-c
opened
6 years ago
0
simplify with InitialWorkDirRequirement
#79
mr-c
closed
6 years ago
0
Rfam library files
#78
aperz
opened
6 years ago
1
schema html parsing?
#77
aperz
closed
6 years ago
1
[MRG] upgrades
#76
mr-c
closed
7 years ago
0
chunk FGS inputs and combine outputs
#75
mr-c
closed
7 years ago
1
Chunking for FGS
#74
rdfinn
closed
7 years ago
1
Test if toil can deal with dynamic memory requests
#73
rdfinn
closed
7 years ago
2
MetaSpades Assembly pipeline tweaks
#72
rdfinn
opened
7 years ago
0
ONT Pipeline
#71
rdfinn
opened
7 years ago
1
Add binning to assembly pipeline
#70
rdfinn
opened
7 years ago
0
Comment about samtools in docker file
#69
rdfinn
opened
7 years ago
1
production switchover checklist
#68
mr-c
opened
7 years ago
0
Run V3 on a Tara dataset
#67
rdfinn
opened
7 years ago
0
Rawreadv4
#66
rdfinn
closed
7 years ago
0
containers
#65
mr-c
opened
7 years ago
4
[wip] add additional outputs
#64
mr-c
closed
7 years ago
0
V3 missing bits and bobs
#63
rdfinn
closed
7 years ago
7
[WIP] Save input object, redo SSU formatting & more
#62
mr-c
closed
7 years ago
0
Resource shape
#61
mr-c
closed
7 years ago
0
fix create_categorisations
#60
mr-c
closed
7 years ago
0
[WIP] Resource shape and typo fixes
#59
mr-c
closed
7 years ago
0
Toil inspired fixes
#58
mr-c
closed
7 years ago
0
toil with CWL on LSF status
#57
mr-c
opened
7 years ago
4
Rawreadv4
#56
rdfinn
closed
7 years ago
0
Fix mapseq2biom & misc updates
#55
mr-c
closed
7 years ago
0
V3 global summary2
#54
mr-c
closed
7 years ago
0
start of V3 global summary & extras
#53
mr-c
closed
7 years ago
0
Refactor v4 assem & tweak to v3
#52
mr-c
closed
7 years ago
0
duplicate headers qiime sadness
#51
mr-c
closed
7 years ago
0
chunk 'em
#50
mr-c
closed
7 years ago
0
add EBI specific execution scripts
#49
mr-c
closed
7 years ago
0
V4 runthrough
#48
mr-c
closed
7 years ago
0
Paired and single run inputs for v4
#47
rdfinn
closed
7 years ago
0
Produce raw read v4 pipeline based on the assembly pipeline
#46
rdfinn
closed
7 years ago
1
Integrate QC
#45
rdfinn
closed
7 years ago
0
discard short 16S matches
#44
mr-c
closed
7 years ago
0
TRNA assembly
#43
rdfinn
closed
7 years ago
0
clean sequence headers
#42
mr-c
closed
7 years ago
0
support assembly of unpaired reads
#41
mr-c
closed
7 years ago
0
replace cmscan with cmsearch
#40
mr-c
closed
7 years ago
0
Post mapseq
#39
mr-c
closed
7 years ago
0
Length trim
#38
mr-c
closed
7 years ago
0
Mini Workflow for sharing with MG-RAST
#37
rdfinn
closed
7 years ago
1
Next