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Hi,
I hope you are all doing well. I have an issue below. Could you please help me fix it? Thanks.
(MPRAflow) nextflow run --w /home/huanglabdell/Documents/MPRAflow/work02232024 association.nf …
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Hi,
Do you have some example data to use as inputs? I see the code examples but am not sure what input format I should use to djinn. Alternatively, a format schema would work so I could simulate…
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Hi,
I tried to run TRUST4 on paired end Bulk RNA-Seq Fastq files, but it failed with "139 at ./run-trust4 line 54" as shown in the screenshot below. Could you tell me what this error message means a…
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Hi, I'm getting the following error when trying to combine GVCF files:
[1779450] [2021-08-04 13:25:45.041] [GLnexus] [error] Failed to genotype: Invalid: genotyper: unexpected result when fetching …
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Hi all, thanks for the wonderful library!
Unfortunately I think I've found a bug. Files compressed with `bgzip` (block gzip) are failing when trying to use `pako` to do streaming decompression.
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The current temp-file-merge-based GAM sort is slower than it could be, and in particular slower than dumping all the reads into RocksDB and reading them back out in sorted order (although that uses mo…
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Hello htslib devs,
I'm starting to work on a htsget-server implementation that relies on htslib, based on preliminary work on https://github.com/samtools/hts-specs/pull/385. The first issue I've fo…
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We have a variant with more than 50 alleles for almost 500000 samples. The line in question is over 3 gb in size.
bcftools and our own program that uses htslib can not read it.
After debugging I not…
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SAM files can contains highly sensitive information that uniquely identifies an individual.
The eXtensible Access Control Markup Language (XACML) [1] defined by OASIS defines a core XML schema for re…
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with the last release, running "make" inside the installation directory
I obtain this error
```bash
cd bamsifter && make
make[2]: Entering directory '/opt/trinity/trinityrnaseq-v2.15.1/trinity…