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There is the annoying bug that, if conda is automatically loaded then NoMachine and some other programs don't work on biowulf. We should document this to avoid headaches and also provide a recommendat…
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ChrX in CHM1 is split by a 1.5kb gap spanned by ONT reads. Confirm latest version fixes the gap.
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Our firewall site: http://fluorine.nimh.nih.gov/redmine/projects/getting-started/wiki might be a good starting point. From that page:
Mandatory Training is very out of date and is superseded by the…
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I got a CHM1 assembly to run from start to end! Thanks so much for developing this and thanks @skoren for all the help in running.
I did notice that in both the ~Dec assembly you shared with us an…
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needs to be converted to the number of minutes like in the biowulf profile
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The user document "Running_on_NIH_Biowulf" section, "create config/samples.txt and config/config.yaml as described in **here**", The "here" is not clickable because it will move to next line when mous…
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Per @handwerkerd's comment in #35 we should expand the pointers to particular biowulf pages. List any items that should get special attention in this issue.
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I am grouping short-running filter jobs using `"{prefix}_{name}"`. The problem is that modification times seem a little messed up on CGEMs. This may be related to snakemake/snakemake#789.
I am run…
jfear updated
3 years ago
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[Taking this from @ms609](https://github.com/ms609/TreeTools/blob/master/.github/workflows/memcheck.yml) and also a thanks to Georgi Boshnakov who closed the loop with [a mention](https://stat.ethz.ch…
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biowulf no longer supports singularity 3.7.0 - update to singularity to 3.7.3