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marbl
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verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
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Job crashes due to a find error
#304
boweny920
opened
7 hours ago
2
Triobinning assembly quality issues
#303
Mrhuangc
opened
1 day ago
1
Assembly graph in non-hpc space
#302
diego-rt
closed
7 hours ago
9
Verkko assemblies contiguity with respect to Hifiasm
#301
SimonaSecomandi
opened
1 week ago
2
Do the ONT data and hifi data have to come from the same sample?
#300
heziqing
closed
1 week ago
2
Commercial License
#299
sh0rt2l0ng
closed
1 week ago
1
v2.2.1 script issue and build issue
#298
jbh-cas
closed
6 days ago
1
Phasing of bubbles for a primate
#297
fergsc
closed
2 weeks ago
2
verkko using both hifi reads and herro-corrected ONT reads
#296
DustinSokolowski
closed
1 month ago
2
SLURM sbatch Error
#295
nickgladman
closed
6 days ago
9
2 chromosomal fusions from verkko 2.2 assembly not supported by the data
#294
tbenavi1
opened
1 month ago
11
PoreC and trio run together
#293
KANGYUlab
closed
1 month ago
2
Verkko using Nanopore reads？
#292
handesome
closed
1 month ago
2
One "untip" job does not finish in time.
#291
JohnUrban
closed
6 days ago
10
Herro dropped reads
#290
fergsc
closed
1 month ago
2
Verkko using HERRO corrected ONT reads
#289
diego-rt
closed
1 month ago
15
Assigned reads for each phased contig
#288
luanelandau
closed
1 month ago
2
Verkko+Hi-C performance problems on complex graphs (datasest without ultralong ONT)
#287
tbenavi1
closed
1 month ago
21
Chromosome 9 assembles worse with Verkko 2.2
#286
tbenavi1
closed
2 months ago
16
Computing resource utilization is very low
#285
sh0rt2l0ng
closed
1 month ago
5
Install problem
#284
handesome
closed
2 months ago
2
Not running final consensus since no rukki paths are available!
#283
JohnUrban
closed
2 months ago
12
Issues with assembly bam
#282
skoren
closed
2 months ago
0
problem with aligning tips
#281
luanelandau
closed
2 months ago
3
conda install may have broken (possibly with a recent update?)
#280
JohnUrban
closed
2 months ago
6
Release 2.2 in BioConda
#279
gq1
closed
2 months ago
2
For --nano, use pass only? or pass and fail?
#278
JohnUrban
closed
2 months ago
2
hapmer.meryl' appears to be built using non-homopolymer compressed kmers
#277
luanelandau
closed
2 months ago
4
Error in the nested 8-hicPipeline
#276
changhan1110
closed
1 month ago
3
How to maximize the number of computing nodes
#275
changhan1110
closed
2 months ago
4
trio asm, colors.csv all one color
#274
abueg
closed
3 months ago
3
error of 4-processONT
#273
JWJ13164328557
closed
2 months ago
13
what is mean of `max_resolve_length` in resolve_triplets_kmerify.py and int number 100000 in 4-processONT.sm?
#272
tiramisutes
closed
3 months ago
2
Issue with SplitONT using Dorado v5 and herro V1
#271
DustinSokolowski
closed
3 months ago
4
Graph cleanup code
#270
skoren
closed
4 months ago
0
assembly[1,2] empty
#269
gdroc
closed
4 months ago
6
Error of 4-processONT
#268
YouxinZhao
closed
3 months ago
6
ERROR in combineConsensus
#267
KANGYUlab
closed
4 months ago
4
segmentation fault during consensus
#266
bernardo1963
closed
4 months ago
6
Error in rule combineConsensus:
#265
wsd2345
closed
5 months ago
4
Segmentation fault
#264
chunlinxiao
closed
4 months ago
3
Too many missing genes
#263
hanqu24
closed
4 months ago
6
TabError in file <string>, line 97:
#262
WengangXbio
closed
5 months ago
2
Assembly more fragmented than expected
#261
dmacguigan
closed
4 months ago
4
assembly.homopolymer-compressed.gfa file?
#260
chunlinxiao
closed
5 months ago
7
FASTA output format incompatible with gVolante
#259
dmacguigan
closed
5 months ago
3
No module named networkx
#258
dmacguigan
closed
5 months ago
5
Passing SBATCH QOS option
#257
dmacguigan
closed
5 months ago
2
Help doc clarification
#256
dmacguigan
closed
5 months ago
2
Core Dump On SLURM
#255
nickgladman
closed
5 months ago
4
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