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Input: http://download.epha.ch/data/matrix/matrix.csv
Output DE: http://pillbox.oddb.org/drug_interactions_csv_de.zip
Output FR: http://pillbox.oddb.org/drug_interactions_csv_fr.zip
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Haplotype Caller still has some problems with GENOTYPE_GIVEN_ALLELES mode.(using the latest build 4.0.11, donwnloaded today)
Summary:
In this case I have a SNP position that I want the genotype re…
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### Use Cases
1. As a user of the Platform, I want to see the history of my target of interest.
2. As a user of the Platform, I want to see a list of all species and relevant homology types for …
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Hi Eric,
When I run `cnvkit.py segment -o bug.cns bug.cnr`, it produces this really strange segment (second in the list, from 20609931 to 24381809):
```
chromosome start end gene log2 depth pro…
tskir updated
6 years ago
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Hello,
I tried running lumpy express with a BAM that has been subsetted to ONLY include chromosome 22 reads (the header lists the whole human genome). I also give it an "-x bed" exclude bed …
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Hello,
I'm running Aldy on some samples I have and almost all of them worked flawlessly for all the gene profiles that are available. However, I have two samples that are both failing to run _DPYD_…
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The drug is metabolized by multiple enzymes. How I can assign enzymes for a drug metabolism.
60% CYP2D6, 10% CYP1A2, 5% CYP2C9, 5% CYP2E1, and 20% UGT
Please advise
mouli
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Hi,
I ran BWA, LongRanger, and EMA for NA12878 WGS dataset from https://support.10xgenomics.com/genome-exome/datasets/2.1.4/NA12878_WGS_v2, and looking at the challenging regions listed in your not…
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Hi,
I was wondering if poor (PM) and extensive (EM) metabolism of CYP2D6 substrates could be modeled in separate populations in PK Sim. Please let me know if there is a solution for this issue. Thank…
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(ie)
mtDNA haplogroup H and the origin of Europeans (Brotherton et al. 2013)
Panel b is particularly interesting, as it clearly shows the Iberian-ness of Bell Beaker mtDNA (BBC), and the South-Eas…