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When a pipeline stage fails with exit code != 0 walrus should remove the container before reattempting to run the pipeline stage. As of now the user will have to remove the container himself.
Note…
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For discussion with @davidbenjamin. Conversation will benefit Mutect2 workflow documentation.
The Mutect2 WDL pipeline at uses the following:
1. SplitIntervals in default mode (clarified in #30…
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In ga4gh-demo.html I see:
`{url: "//dn7ywbm9isq8j.cloudfront.net/annotations/hg19/genes/gencode.v18.collapsed.bed",`
But no amount of looking and experimenting has led me to hg38 v24 gencode gene a…
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The BRCA challenge is a driving project of the GA4GH whose mission is to construct a global database of BRCA1 and BRCA2 variants to facilitate rapid and reliable clinical diagnosis and to support coll…