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We are annotating Q9Y468 (LMBL1_HUMAN) from PMID:17540172 and it is binding 4 other methylated histones compared to the 2 existing children. Should I request all specific terms (esp now that TG FF is …
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I am getting a seg fault from this command line:
/net/noble/vol1/home/noble/proj/crux/trunk/release/src/crux tide-index --mods-spec 1KR+14.0157,1MLPDHY+15.9949,1LR+27.9949,1KR+28.0314,1K+42.0470,1KST…
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the replacement of resident histones which results in
altered chromatin states as a result of the removal of
histone modifications
(I cobbled this def from a EMBO report PMID: 15809658
i'm sure it ca…
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We always try to annotate as specifically as possible, and encourage our community to do the same.
This has highlighted a number of pages where annotations are sometimes get modelled arbitrarily sl…
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Hi,
I need a new term for a specific histone demethylase in the function
ontology. We don't seem to have any histone demethylase terms, or
even much in the way of protein demethylase terms. The EC …
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Hi,
I am trying to create a compound node and move some elements to that compound node by using eles.move( ) function. I observed that when width or height attribute is set for nodes, eles.move( ) …
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Hi,
New term request for 'transcription factor TFTC complex'.
transcription factor complex (GO:0005667)
--[i] transcription factor TFTC complex (GO:new)
DNA-directed RNA polymerase II, holoenzyme (…
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we have
GO:0016574 : histone ubiquitination
--GO:0010390 : histone monoubiquitination
I want to capture that the experiments I'm annotating refer to
histone H2B K120 ubiquitination
(I used K120, t…
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Hi,
Is it necessary for peak calling of histone modifications ChIP-seq data to remove the mapped reads on chrN_random, ChrUn and chrM before running Q?
Thank you!
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Hi, Dr Liu,
Is it necessary for peak calling of histone modifications ChIP-seq data to remove the mapped reads on chrN_random, ChrUn and chrM before running MACS2?
Thank you!