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### **If the problem is as follows：**
{
make -C src pindel
make[1]: Entering directory '/home/mylinux/Desktop/the_pindel/pindel/src'
make[1]: *** No rule to make target '/home/mylinux/Desktop/pind…
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Hi guys,
I am trying to install velocyto on mac 10.13.6. I have tried everything I can find on here but nothing has worked yet.
I get the following error message
(base) Kristens-MBP:~ Kriste…
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Hey there kojix2,
Today I tested ruby-htslib a bit following the examples in the main README e. g.
bam = HTS::Bam.open("foobar.bam")
bam.each do |r|
pp name: r.qname,
And so…
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Hi,
Our lab is having trouble installing RUTH, and have tried different gcc compilers and older versions of htslib. We're wondering if it is related to the recent updates to RUTH, but we don't hav…
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In pysam, there are some options for filtering, min base quality, stepper, mapping quality, ignore overlaps .. etc.
Are there any options available for pileup function?
Thanks.
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```
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### Running command:
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### /ho…
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The Autumn update of htslib will include support for parsing modified base tags from alignment files: https://github.com/samtools/htslib/blob/develop/NEWS.
Wrapping the API for use from Python woul…
cjw85 updated
2 years ago
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I would like to point out that identifiers like “[`_CRAM_SAMTOOLS_H_`](https://github.com/samtools/htslib/blob/5d114ebd8e9b80622769b8e575c5a9359cd51273/cram/cram_samtools.h#L31 "Update candidate")” an…
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I successfully installed miniconda and htslib using the command 'conda install -c bioconda htslib' on my new Macbook pro terminal. But when i attempt installing samtools using the command 'conda insta…
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There are at least three ways to read variant files in htslib: indexed, unindexed, and synced. Each has advantages and drawbacks. Enable the use of all of these via Variant Reader/Iterators and make…