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We should be able to use the entire reaction matrix in bigg as the universal set of reactions for gapfilling. This would be a great way to leverage the intergrated ID system.
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Hi all,
I have a bunch of genome-scale models from [ModelSEED](modelseed.org), and I'd love to take a look at them (they're good on building the model, but the site is still under development for v…
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Hi folks,
I would like to link MetaCyc reactions and compounds to their equivalents in ModelSEED. Is there a ModelSEED website that has a unique URL for each compound or reaction identifier? The U…
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- [x] Spin up a second instance of the ModelSEED website **(6/29)**
(**EDIT**: Neal decided to use a plant/microbe toggle within the same ModelSEED website, keeping all functionality in a single …
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Hi
I try to get ModelSEED compounds with the API.
There are 27,693 compounds unfortunately whatever limit value I use in the query, I can only get 25,000 compounds.
Looks to have a hard coded limit so…
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I'm editing this list in place, now, so that there'll not be any surprises when I get back from England:
1) Development Deployment:
At time of writing, the development environment is active, and …
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We will collect one or more Reference Workspaces at PATRIC that are used by PATRIC curators to import, curate and publish high value omics datasets generated by either other NIAID funded projects or p…
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See https://github.com/ModelSEED/ModelSEEDDatabase/issues/27.
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User submitted...
In the meantime I have found a compound entry with some possible errors: cpd11684
This compound looks to be the same than CHEBI:16042 (http://www.ebi.ac.uk/chebi/searchId.do?chebi…
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@nconrad Looking into the faq.md file under ModelSEED/Documentation, I noticed that you state all methods are the same as in the original nature paper and that all results should be the same as those …
chian updated
9 years ago