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ModelSEED
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ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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dGPred rxn thermo
#254
freiburgermsu
opened
6 months ago
0
Dev
#253
Vik-u
closed
6 months ago
0
Rhea integration 1022
#252
samseaver
closed
1 year ago
0
Merging cpd02522 to cpd01046
#251
samseaver
closed
1 year ago
0
Merging generic fructose cpd19102 to cpd00082
#250
samseaver
closed
1 year ago
0
Fixing errors with the User source for curated compounds and reactions
#249
samseaver
closed
1 year ago
1
Chemistry staging
#248
samseaver
closed
3 years ago
0
Adding curation files
#247
samseaver
closed
3 years ago
0
Updating the resolution of figures to use in NAR
#246
samseaver
closed
3 years ago
0
Adding nad antiporters for eukaryotes
#245
samseaver
closed
3 years ago
0
Chemistry staging
#244
samseaver
closed
3 years ago
0
Adding script for modifying reaction stoichiometry
#243
samseaver
closed
3 years ago
0
New compounds in iron and sulfur metabolism
#242
samseaver
closed
3 years ago
0
Adding new script for adding compounds to database
#241
samseaver
closed
3 years ago
1
Updating Rebalance_Reactions.py to make it more user-friendly
#240
samseaver
closed
3 years ago
0
Cytochrome updates
#239
samseaver
closed
3 years ago
0
Minor fixes
#238
samseaver
closed
3 years ago
0
Reprinting fixes
#237
samseaver
closed
3 years ago
0
Code staging
#236
samseaver
closed
3 years ago
0
Chemistry staging
#235
samseaver
closed
3 years ago
0
ComplexRoles.tsv and TemplateReactions.tsv files
#234
ozelnu
opened
3 years ago
0
Removing templates
#233
samseaver
closed
3 years ago
0
modelSEED model not annotated
#232
ensakz
closed
3 years ago
2
Issues with aerobactin
#231
smoretti
opened
3 years ago
0
Use of extra boundary reactions, metabolites, and introduction of _b suffix
#230
gregmedlock
opened
3 years ago
1
Latest set of updates for tagging
#229
samseaver
closed
3 years ago
0
Building the workspace objects for KBase and ModelSEED
#228
samseaver
closed
3 years ago
0
NAR 2020 figure/statistics
#227
samseaver
closed
3 years ago
0
Paper revisions nar 2020
#226
samseaver
closed
3 years ago
0
Reorganizing some files
#225
samseaver
closed
4 years ago
0
Updating READMEs
#224
samseaver
closed
4 years ago
1
Solr documentation / examples
#223
samseaver
closed
4 years ago
0
New set of pKas / pKbs from Marvin
#222
samseaver
closed
4 years ago
0
fixed spaced alias from iSO783
#221
Fxe
closed
4 years ago
1
Removing old EC in response to MODELSEED-113
#220
samseaver
closed
4 years ago
0
Update minor changes
#219
samseaver
closed
4 years ago
0
Ignoring sru in thermodynamics
#218
samseaver
closed
4 years ago
0
switching text from formation to contribution
#217
samseaver
closed
4 years ago
0
Forgot to refresh the database, some names and aliases copied to obso…
#216
samseaver
closed
4 years ago
0
Cpd00491 reaction disambiguation
#215
samseaver
closed
4 years ago
0
merging cpd00804 to cpd00491 in 14 reactions, removing 2
#214
samseaver
closed
4 years ago
0
disambiguating cpd00491 as cpd27436
#213
samseaver
closed
4 years ago
0
merging cpd19046 to cpd02535 in 7 reactions
#212
samseaver
closed
4 years ago
0
merging cpd08300 to cpd00522 in 11 reactions, removing 2
#211
samseaver
closed
4 years ago
0
merging cpd19045 to cpd00498 in 4 reactions
#210
samseaver
closed
4 years ago
0
merging cpd27358 to cpd00751 in 7 reactions, removing 2
#209
samseaver
closed
4 years ago
0
merging cpd27379 to cpd00396 in 6 reactions, removing 1
#208
samseaver
closed
4 years ago
0
merging cpd30744 to cpd00881 in 0 reactions (zero)
#207
samseaver
closed
4 years ago
0
fixing linked reactions again, I think I found another bug
#206
samseaver
closed
4 years ago
0
merging cpd27796 to cpd16503 in 12 reactions, removing 5
#205
samseaver
closed
4 years ago
0
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