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ModelSEED
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ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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merging cpd23282 to cpd00287 in 5 reactions
#204
samseaver
closed
4 years ago
0
merging cpd28148 to cpd01078 in 5 reactions
#203
samseaver
closed
4 years ago
0
merging cpd27103 to cpd00276 in 14 reactions, removing 1
#202
samseaver
closed
4 years ago
0
merging cpd27569 to cpd00232 in 21 reactions, removing 1
#201
samseaver
closed
4 years ago
0
merging cpd27797 to cpd07274 in 21 reactions
#200
samseaver
closed
4 years ago
0
merging cpd27371 to cpd03389 in 26 reactions, removing 3
#199
samseaver
closed
4 years ago
0
merging cpd27040 to cpd19102 in 35 reactions, removing 5
#198
samseaver
closed
4 years ago
0
Merging cpd27608 to cpd00122 in 20 reactions, removing 4
#197
samseaver
closed
4 years ago
0
Merging cpd19012 to cpd00150 in 39 reactions, removing 4
#196
samseaver
closed
4 years ago
0
Merging cpd00239 and cpd24697
#195
samseaver
closed
4 years ago
0
Fixing protein structures
#194
samseaver
closed
4 years ago
0
Updating acp formulas
#193
samseaver
closed
4 years ago
0
Fixing compound obsolescence
#192
samseaver
closed
4 years ago
0
Database maintenance
#191
samseaver
closed
4 years ago
1
Updating kegg sru
#190
samseaver
closed
4 years ago
0
Updating obsolete compounds in reaction stoichiometry
#189
samseaver
closed
4 years ago
0
Major update where all aliases, names, and EC numbers are shared betw…
#188
samseaver
closed
4 years ago
0
removing duplicate aliases
#187
samseaver
closed
4 years ago
0
Scripts for properly removing new but obsolete reactions
#186
samseaver
closed
4 years ago
0
Weird problem with notes field in rxn42111 fixed
#185
samseaver
closed
4 years ago
0
Turns out that disambiguation of cpd03657 led to some reaction obsole…
#184
samseaver
closed
4 years ago
0
Structures reporting
#183
samseaver
closed
4 years ago
0
Refining computation of statistics for thermodynamics
#182
samseaver
closed
4 years ago
0
Media + LICENSE update
#181
Fxe
closed
4 years ago
0
Updating to re-calculate statistics with non-obsolete reactions
#180
samseaver
closed
4 years ago
0
Updating to assume reversible reactions in some cases
#179
samseaver
closed
4 years ago
0
cpd03657 disambiguation
#178
samseaver
closed
4 years ago
0
Double-checking is_transport flag for ~200 reactions
#177
samseaver
closed
4 years ago
0
New solr dev
#176
samseaver
closed
4 years ago
1
Major Milestone: Release of ModelSEED Biochemistry v3.0
#175
samseaver
closed
4 years ago
0
Understanding releases
#174
Midnighter
closed
4 years ago
2
Removing newly obsolete reactions
#173
samseaver
closed
4 years ago
0
New ontology
#172
samseaver
closed
4 years ago
1
Nwchem mol2
#171
nkkchem
opened
4 years ago
4
porting ontology scripts
#170
Fxe
closed
4 years ago
2
Thermodynamics data (v2.5 equilibrator_api)
#169
samseaver
closed
4 years ago
1
adding Aspergillus niger SBMLs and updating Fungal_Models.xlsx
#168
jplfaria
closed
4 years ago
2
Statistics
#167
samseaver
closed
4 years ago
1
Thermodynamics
#166
samseaver
closed
4 years ago
0
Thermodynamics
#165
samseaver
closed
4 years ago
0
Ignoring monomeric structure for polymeric compound: cpd17398
#164
samseaver
closed
4 years ago
0
Thermodynamics
#163
Fxe
closed
4 years ago
1
Refining structures
#162
samseaver
closed
5 years ago
1
Stereo ontology
#161
samseaver
closed
4 years ago
0
Fixing reactions lists
#160
samseaver
closed
5 years ago
0
Moving to list of aliases in JSON
#159
samseaver
closed
5 years ago
0
Thermodynamics
#158
samseaver
closed
5 years ago
0
Thermodynamics
#157
Fxe
closed
5 years ago
0
Thermodynamics
#156
Fxe
closed
5 years ago
2
Simplifying equations
#155
samseaver
closed
5 years ago
1
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