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ModelSEED
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ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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Removing the default '[0]' string for compartments in the biochemistry
#154
samseaver
closed
5 years ago
1
Sanitizing reaction aliases
#153
samseaver
closed
5 years ago
0
Conflicts batch nine jf fl
#152
samseaver
closed
5 years ago
0
Conflicts batch eight jf
#151
samseaver
closed
5 years ago
0
Adding ontology attribute to database
#150
samseaver
closed
5 years ago
0
Conflicts batch seven fl
#149
samseaver
closed
5 years ago
0
Rebased conflicts batch six
#148
samseaver
closed
5 years ago
0
Conflicts batch six
#147
samseaver
closed
5 years ago
1
Conflicts batch five jj
#146
samseaver
closed
5 years ago
0
Conflicts batch four
#145
samseaver
closed
5 years ago
0
Conflicts batch three
#144
samseaver
closed
5 years ago
1
Conflicts batch two
#143
samseaver
closed
5 years ago
0
Fixing batch of structure conflicts
#142
samseaver
closed
5 years ago
1
Fixing elemental structures
#141
samseaver
closed
5 years ago
0
Updating validation to avoid printing out duplicates and to use consi…
#140
samseaver
closed
5 years ago
3
MIT License
#139
samseaver
closed
5 years ago
0
External pathways
#138
samseaver
closed
5 years ago
2
Reprinting biochemistry
#137
samseaver
closed
5 years ago
1
Json types
#136
JamesJeffryes
closed
5 years ago
2
MNX/RHEA provenance
#135
Fxe
closed
5 years ago
0
Solr-ready objects
#134
samseaver
closed
5 years ago
1
Disambiguating quinones
#133
samseaver
closed
5 years ago
0
Disambiguation of compounds
#132
samseaver
closed
5 years ago
1
ACP Formulas and balancing
#131
samseaver
closed
5 years ago
0
Cleaning up aliases
#130
samseaver
closed
5 years ago
0
New model seed template
#129
samseaver
closed
5 years ago
0
Updating relative paths in library and Structures scripts
#128
samseaver
closed
5 years ago
1
mnx/rhea
#127
Fxe
closed
5 years ago
1
Fixed bug in matching MetaCyc compound identifiers in equations
#126
samseaver
closed
5 years ago
0
Updating metacyc
#125
samseaver
closed
5 years ago
1
Re-doing KEGG update
#124
samseaver
closed
5 years ago
0
Updating and Resolving Structural conflicts
#123
samseaver
closed
5 years ago
1
metanetx aliases
#122
Fxe
closed
5 years ago
1
adding KEGG_KO -> ModeSEED translations
#121
janakagithub
closed
5 years ago
0
Added detailed documentation for Solr installation/launch and connection to ModelSEED-UI.
#120
qzzhang
closed
4 years ago
4
Update ontology objects and ontology object generation/loading scripts
#119
janakagithub
closed
5 years ago
5
Addition of parsed biochemistry from two primary sources
#118
samseaver
closed
5 years ago
5
added metacyc ontology dictionary parser
#117
jeffkimbrel
closed
5 years ago
1
Updating Structures, Formulas, Charges
#116
samseaver
closed
5 years ago
3
added metacyc parser
#115
jeffkimbrel
closed
5 years ago
3
Updating formula charge
#114
samseaver
closed
5 years ago
1
Script to create KEGG orthology/reaction and EBI EC number ontology dictionaries
#113
jeffkimbrel
closed
5 years ago
0
create KEGG ontology dictionary
#112
jeffkimbrel
closed
5 years ago
1
Re-organization of aliases
#111
samseaver
closed
5 years ago
1
Fake entries
#110
smoretti
opened
5 years ago
0
Classifying aliases
#109
samseaver
closed
5 years ago
1
Updating and checking formulas
#108
samseaver
closed
5 years ago
1
fixing fe obsolescence to match template
#107
samseaver
closed
5 years ago
0
Fixing obsoleteflag
#106
samseaver
closed
5 years ago
0
Kbase object
#105
samseaver
closed
5 years ago
0
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